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7 protocols using las 3000 device

1

SDS-PAGE Analysis of Protein Samples

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Samples for analysis by SDS-PAGE were mixed with 1× Laemmli Buffer and processed as described (44 ). Approximately 0.2% of whole cell lysate (WCL) and 10% of eluates were loaded. Detection of proteins was performed with antibodies described in Supplementary Table S4 using the chemiluminescence western blotting reagent (Roche) in a LAS-3000 device (Fujifilm).
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2

Western Blot Protein Analysis Protocol

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Lysates were extracted from cells using RIPA buffer (Biosesang, Inc.) and total protein was determined by BCA assay. A total amount of 30 µg of proteins were loaded. Proteins were separated using 10% SDS-PAGE and transferred to nitrocellulose membranes (Whatman; GE Healthcare Life Sciences). The membranes were blocked with 5% skimmed milk (Biosesang, Inc.) in TBS-Tween (0.1% Tween-20) for 1 h at 20–25°C. The membranes were incubated with primary antibodies for overnight at 4°C. Then, the membranes were incubated with HRP-conjugated secondary antibodies for 1 h at 20–25°C. The bands were developed using enhanced chemiluminescence solution (WEST-ZOL Plus, iNtRON Biotechnology) and visualized with the LAS-3000 device (FujiFilm). The band intensity was analyzed with ImageJ software (version 1.38; National Institutes of Health).
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3

Protein Gel Electrophoresis and Viral RNA Analysis

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NuPAGE 4–12% Bis-Tris protein gel (Thermo Fisher Scientific, Waltham, MA, USA) was used for SDS-PAGE and Western blotting analyses. The chemiluminescence signals were detected using the LAS-3000 device (FUJIFILM, Tokyo, Japan). For detection of FLAG-tagged Met-IR and untagged full-length replication proteins of TMV, anti-DYKDDDDK antibody (clone 1E6; FUJIFILM Wako Pure Chemical, Osaka, Japan) and antisera against tomato mosaic virus replication proteins [8 (link)] were used, respectively. Luciferase activity was measured using the Renilla Luciferase Assay System (Promega) and the TD-20/20 luminometer (Promega). Radiolabeled RNA products were separated by 8 M urea–2.4% PAGE and detected using the Typhoon FLA 7000 scanner (GE Healthcare, Chicago, IL, USA). Band intensity of viral genomic RNA was quantified using ImageJ software (National Institutes of Health, Bethesda, MD, USA).
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4

Western Blot Analysis of TASK1 and TALK2 Proteins

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Cells were lysed in RIPA Buffer (Sigma-Aldrich) with protease inhibitor cocktail (Sigma-Aldrich). Homogenates were centrifuged (15000 × g, 30 min, 4°C) and the protein concentration of the supernatant was calculated using a DC protein assay (Bio-Rad, Hercules, CA). The lysates were boiled with 5×sample buffer with 2-mercaptoehanol and finally subjected to SDS-PAGE (7.5%). The blots were blocked using blocking buffer (Beacle, Kyoto, Japan) for 12 hr at 4°C, and then incubated with anti-TASK1 or anti-TALK2 antibodies for 12 hr at 4°C. After washing, the blots were incubated with anti-rabbit or anti-mouse horseradish peroxidase-conjugated IgG (Chemicon International, Temecula, CA). An enhanced chemiluminescence detection system (GE Healthcare Biosciences, Piscataway, NJ) was used to obtain images of the bound antibody. The resulting images were analyzed using a LAS-3000 device (Fujifilm, Tokyo, Japan).
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5

Analysis of Signaling Pathways in BM-MSCs

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BM-MSCs seeded in 3D gelatin scaffolds were cultured for 24 hours or 10 days. Cells were lysed with 75 μl of lysis buffer (PBS, 1% Triton X-100, 100 mM PMSF, 1 μg/ml pepstatin, 1 μg/ml leupeptin, 1 mM of sodium orthovanadate, 10 mM NaF and 10 mM β-glycerophosphate) for one hour at 4°C. Thirty micrograms of protein samples were subjected to SDS-PAGE and immunoblotting. Membranes were incubated with different antibodies: pGSK3α/β Ser9/21 (9331S), pSMAD1/5/8 Ser465/467 (9511S) and pS6 Ser235/236 (2211) and pp38 Thr180/Tyr182 (9211S) from Cell Signaling Technology, pErk1/2 (M5670) from Sigma, β-catenin (610154) from BD Transduction Laboratories and α-tubulin (T6199) from Sigma, all diluted to a ratio of 1:1000. Horseradish peroxidase-conjugated secondary antibodies were used, followed by incubation with EZ-ECL reagent (Biological Industries). A chemiluminescent image of the immunoblots was captured with a Fujifilm LAS 3000 device.
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6

Co-Immunoprecipitation of Cav1 and JP2

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Co-IP was performed using the Pierce Co-Immunoprecipitation Kit (number 26149) according to the experimental manual supplied by Thermo Scientific (Waltham, MA) (22 (link)). The rat mesenteric artery was lysed in IP lysis/wash buffer with protease inhibitor mixture (Sigma). Precleared whole lysates were incubated with AminoLinkPlus Coupling Resin or Control Agarose Resin slurry with which 10 μg of anti-Cav1 was immobilized, washed with IP lysis/wash buffer, eluted with elution buffer, and subjected to SDS-PAGE (10%). In Western blot analysis, 30 μg of total protein was applied to the gels. The blots were incubated with anti-JP2 antibodies and then incubated with anti-goat horseradish peroxidase-conjugated IgG (Chemicon International, Temecula, CA). Images were obtained using an enhanced chemiluminescence detection system (Amersham Biosciences, Piscataway, NJ) and analyzed by a LAS-3000 device (Fujifilm, Tokyo, Japan). Full western blot images are presented in Fig. S8.
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7

Co-Immunoprecipitation of TASK1 in HEK293 Cells

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Co-IP procedures were carried out using a Pierce Co-Immunoprecipitation Kit according to the experimental manual supplied by Thermo Scientific [19 (link)]. Briefly, HEK293 cells were lysed in IP Lysis/Wash Buffer (0.025 M Tris, 0.15 M NaCl, 0.001 M EDTA, 1% NP-40, 5% glycerol; pH 7.4) with protease inhibitor cocktail (Sigma-Aldrich). Homogenates were centrifuged (15000 × g, 30 min, 4°C) and supernatant was precleared with control resin (1 h, 4°C). Precleared lysates (~ 0.5 mg of protein) were incubated with AminoLink Plus Coupling Resin, with which 10 μg anti-GFP antibody (mFX73, Wako) was immobilized (overnight, 4°C). The incubated lysates were washed with IP Lysis/Wash Buffer, eluted with Elution Buffer, boiled with 5× sample buffer with 2-mercaptoehanol and finally subjected to SDS-PAGE (10%). The blots were incubated with anti-TASK1 antibody and then incubated with anti-rabbit horseradish peroxidase-conjugated IgG (Chemicon International, Temecula, CA). An enhanced chemiluminescence detection system (GE Healthcare Biosciences, Piscataway, NJ) was used for getting images of the bound antibody. Resulting images were analyzed by a LAS-3000 device (Fujifilm, Tokyo, Japan).
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