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21 protocols using anti mip1β pe

1

Assay for NK Cell Activation Markers

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An assay to determine NK cell activation (NKA) state based on the expression of surface CD107a and intracellular production of IFNγ and MIP1β was performed as previously described3 (link). NK cells were isolated from whole blood from healthy donors using negative selection with RosetteSep (STEMCELL Technologies), added to a SIVmac239 gp120-absorbed plate with purified IgG, anti-CD107a-phycoerythrin (PE)-Cy5 (BD), brefeldin A (Sigma), and GolgiStop (BD), and incubated for 5 hrs at 37°C. After the incubation, cells were stained for surface markers using anti-CD16-allophycocyanin (APC)-Cy7 (BD), anti-CD56-PE-Cy7 (BD), and anti-CD3-Alexa Fluor 700 (BD) and then stained intracellularly with anti-IFNγ-APC (BD) and anti-MIP1β-PE (BD) after treatment with Perm A and B solutions (Invitrogen). Cells were then fixed in 4% paraformaldehyde and analyzed by flow cytometry. NK cells were defined as CD3-negative and CD16-positive and/or CD56-positive, and the percent of NK cells positive for each marker was determined.
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2

NK Cell Functional Assay with Immune Complexes

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Human NK cells were isolated from buffy coats using RosetteSep NK cell enrichment kit (StemCell Technologies) and Ficoll separation. The isolated NK cells were rested overnight at 1.5 × 106 cells/mL in IL-15 at 37°C. ELISA plates were coated with antigen at 300 ng/well and incubated for 2 hours at 37°C. Plates were blocked with 5% BSA in PBS overnight at 4°C. The next day, 100 μL of antibodies, at a concentration of 5 μg/mL, were added to the plates. Plates were incubated for 2 hours at 37°C to form immune complexes. After the incubation, NK cells were added to the plates at 5 × 104 cells/well in R10 supplemented with anti-CD107a PE-Cy5, Brefeldin A (MilliporeSigma, B7651-5MG), and GolgiStop (BD Biosciences, 555802). Plates were incubated for 5 hours at 37°C. Following the incubation, NK cells were stained for the surface markers with anti-CD56 PE-Cy7, anti-CD16 APC-Cy7, and anti-CD3 Pacific Blue (BD Biosciences, 557747, 557758, 558124). NK cells were fixed and permeabilized with Fix&Perm cell permeabilization kit (Invitrogen, Thermo Fisher Scientific). Cells were incubated with anti–MIP-1β PE and anti–IFN-γ FITC (BD Biosciences, 550078, 340449) to stain for intracellular markers. Cells were acquired on an Intellicyt iQue.
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3

Assessing NK Cell Activation by gp120

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An assay to determine the expression of surface CD107a and intracellular production of IFN-γ and MIP-1β was performed by pulsing the CEM-NKr CCR5+ T lymphoblast cell line with gp120 SF162 (60 μg/ml), as previously described [16 ]. NK cells were isolated from whole blood from healthy donors using negative selection with RosetteSep (STEMCELL Technologies), then combined with CEM-NKr cells at a ratio of 5:1. Purified IgG, anti–CD107a–phycoerythrin (PE)–Cy5 (BD), brefeldin A (10 mg/ml) (Sigma), and GolgiStop (BD) were added for 5 hours at 37°C. The cells were then first stained for surface markers using anti–CD16–allophycocyanin (APC)–Cy7 (BD), anti–CD56-PE-Cy7 (BD), and anti–CD3–Alexa Fluor 700 (BD) and then stained intracellularly with anti–IFN-γ–APC (BD) and anti–MIP-1β–PE (BD) using Fix and Perm A and B solutions (Invitrogen). The cells were then fixed in 4% paraformaldehyde and analyzed by flow cytometry. NK cells were defined as CD3-negative and CD16- and/or CD56-positive.
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ELISA-Based NK Cell Activation Assay

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ELISA-based antibody-dependent NK cell activation assays were performed18 (link),62 (link). ELISA plates (Thermo Fisher NUNC MaxiSorp flat bottom) were coated with PPD (300 ng/well) or BSA as a negative control at 4°C for 16 hrs. Plasma (at 1:100, 1:1000, 1:10,000 dilutions in PBS) was added to each well. NK cells were isolated from whole blood from healthy HIV negative donors with RosetteSep (Stem Cell Technologies). NK cells (5x104 per well), anti-CD107a-phycoerythrin (PE)-Cy5 (BD), brefeldin A (10 mg/ml) (Sigma), and GolgiStop (BD) were added and incubated for 5 hrs at 37°C. Cells were stained for surface markers using anti-CD16–allophycocyanin (APC)-Cy7 (BD), anti-CD56-PE-Cy7 (BD), and anti-CD3-AlexaFluor 700 (BD), and intracellularly with anti-IFNγ-APC (BD) and anti-MIP1β-PE (BD) using Fix and Perm A and B solutions (ThermoFisher). NK cells were defined as CD3- and CD16/56+ (Extended data Figure 8C). NK cell activation assays were performed in across dilutions stated above using cells from four healthy HIV negative donors.
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5

SARS-CoV-2 S Protein-Induced NK Cell Responses

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For analysis of NK-cell related responses, an ELISA-based assay was used. Therefore, 96-well ELISA plates (Thermo Fisher) were coated with SARS-CoV-2 S at 37°C for 2h. Plates were then washed and blocked with 5% BSA in PBS overnight at 4°C. NK cells were isolated from buffy coats from healthy donors (MGH blood donor center) using the RosetteSep isolation kit (Stem Cell Technologies) and NK cells were rested overnight supplemented with IL-15 (Stemcell). Serum samples were diluted 1:50 and incubated at 37°C for 2h on the ELISA plates. A staining cocktail of anti-CD107a-PE-Cy5 stain (BD), brefeldin A (Sigma), and GolgiStop (BD) was added to the NK cells and 5×104 NK cells per well were added and incubated for 5h at 37°C. NK cells were fixed and permeabilized using Perm A and B (Thermo Fisher) and surface markers were stained for with anti-CD16 APC-Cy7 (BD), anti-CD56 PE-Cy7 (BD) and anti-CD3 AlexaFluor 700 antibodies (BD). Intracellular staining included anti-IFNγ APC (BD) and anti-MIP-1β PE (BD). Acquisition occurred by flow cytometry iQue (Intellicyt), equipped with a robot arm (PAA). NK cells were defined as CD3-, CD16+ and CD56+. The ADNKA assay was performed in duplicate across two blood donors.
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6

NK Cell Activation Assay Protocol

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An assay to determine NK cell activation (NKA) state based on the expression of surface CD107a and intracellular production of IFNγ and MIP1β was performed as previously described. NK cells were isolated from whole blood from healthy donors using negative selection with RosetteSep (STEMCELL Technologies). Following a pulse with SF162 gp120 (60 μg/ml), T lymphoblast CEM‐NKr cells and isolated primary NK cells were mixed at a ratio of 1:5, and purified IgG, anti‐CD107a‐phycoerythrin (PE)‐Cy5 (BD), brefeldin A (10 mg/ml) (Sigma), and GolgiStop (BD) were added. After a 5‐h incubation at 37°C, cells were first stained for surface markers using anti‐CD16‐allophycocyanin (APC)‐Cy7 (BD), anti‐CD56‐PE‐Cy7 (BD), and anti‐CD3‐Alexa Fluor 700 (BD) and then stained intracellularly with anti‐IFNγ‐APC (BD) and anti‐MIP1β‐PE (BD) after treatment with Fix and Perm A and B solutions (Invitrogen). Cells were then fixed in 4% paraformaldehyde and analyzed by flow cytometry. NK cells were defined as CD3‐negative and CD16‐positive and/or CD56‐positive, and the percent of NK cells positive for each marker was determined.
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7

NK Cell Degranulation Assay

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The capacity of serum to promote NK degranulation was performed as in Chung et al., (2014) and Sips et al. (2016) (link). Targets were prepared by pulsing CEM-NKr-CCR5 cells with gp120 YU-2 (ImmuneTech, 50 μg/ml) as previously described (Chung et al., 2014 ). After washing excess gp120, the pulsed cells were co-cultured with primary NK cells (prepared as by negative selection as above) at a ratio of 5:1 effectors: target, in the presence of diluted donor plasma (1:100 final dilution), anti-CD107a-PE-Cy5 (BD), brefeldin A (10 mg/ml, Sigma), and GolgiStop (BD) for 5 hours at 37°C. After incubation, cells were stained for surface markers with anti-CD16 APC-Cy7, anti-CD56 PE-Cy7, and anti-CD3 AF700, washed, followed by fixation and permeabilization with Fix & Perm kit (ThermoFisher). Intracellular staining was performed with anti–IFN-γ–APC (BD) and anti–MIP-1β–PE (BD). Cells were analyzed on a BD LSRII flow cytometer. NK cells were defined as CD3-negative, and CD16+ and/or CD56+.
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8

NK Cell-Mediated Immune Function Assay

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An assay to determine the expression of surface CD 107a and intracellular production of IFN-γ and MIP-1β was performed by pulsing the CEM-NKr CCR5+ T lymphoblast cell line with rgp120SIVmac251 (60 mg/ml), as previously described51 (link). NK cells were isolated from whole blood from healthy donors using negative selection with RosetteSep (STEMCELL Technologies), as recommended by the manufacturer. The CEM-NKr cells and isolated primary NK cells were mixed at a ratio of 1:5, and purified IgG, anti- CD107a-phycoerythrin (PE)-Cy5 (BD), brefeldin A (10 mg/ml) (Sigma-Aldrich), and GolgiStop (BD) were added for 5 h at 37 °C. The cells were then first stained for surface markers using anti-CD 16-allophycocyanin (APC)-Cy7 (BD), anti-CD56-PE-Cy7 (BD) and anti-CD3-Alexa Fluor 700 (BD) and then stained intracellularly with anti-IFN-γ-APC (BD) and anti-MIP-1β-PE (BD) using Fix and Perm A and B solutions (Invitrogen). The cells were then fixed in 4% paraformaldehyde and analyzed using flow cytometry. NK cells were defined as CD3 and CD16 and/or CD56+.
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9

Flow Cytometric Analysis of Antibody-Dependent NK Cell Activation

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Natural killer cell (NK) activation and degranulation via CD107a, IFN-γ and MIP-1β detection was assessed via an ELISA-based antibody-dependent natural killer (NK) cell activation assay [52 (link)]. ELISA plates (Thermo Fisher NUNC MaxiSorp flat bottom) were coated with gp140 ConS (200 ng per well) at 37°C for 2 h followed by blocking with 5% BSA in PBS overnight at 4°C. NK cells were isolated from buffy coats from healthy donors with RosetteSep (Stem Cell Technologies) and rested over night with 1 ng/ml IL-15. The next day, after washing the blocked ELISA plates, 50 μl of samples at a 1:25 dilution in PBS were added to each well. Plates were incubated at 37°C for 2 h to allow immune complex formation. Then, 5×104 NK cells with anti-CD107a-PE-Cy5 stain (BD), brefeldin A (5 mg/ml) (Sigma), and GolgiStop (BD) were added to each well and incubated for 5 h at 37°C. NK cells were fixed and permeabilized using Perm A and B solutions (ThermoFisher). Cells were subsequently stained for surface markers with anti-CD16 APC-Cy7 (BD), anti-CD56 PE-Cy7 (BD) and anti-CD3 AlexaFluor 700 (BD). Intracellular staining included anti-IFNγ FITC (BD) and anti-MIP-1β PE (BD). Acquisition occurred by flow cytometry (IntelliCyt, iQue Screener plus). NK cells were defined as CD3- and CD56+. The antibody-dependent NK cell degranulation assay was performed in duplicate across two blood donors.
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10

NK Cell Degranulation and Cytolysis Assay

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A modified ELISA-based assay for the detection of CD107a as a surrogate marker of NK-cell-mediated degranulation and cytolysis was performed as previously described (40 (link)). Briefly, a 96-well ELISA plate was coated overnight at 4°C with recombinant protein. Purified IgG was added to each well, and the plate was incubated at 37°C for 2 h. HIV-negative plasma samples or medium alone was used as a negative control, while HIVIG (pooled HIV immunoglobulin G) (NIH AIDS Reagents Program) was used as a positive control. A total of 5 × 104 NK cells enriched via negative selection from healthy blood donors (RosetteSep; Stemcell Technologies) were added to each well in the presence of brefeldin A (BioLegend), Golgi stop, and anti-CD107a-PE-Cy5 (BD Biosciences). Plates were incubated for 5 h at 37°C with 5% CO2. Cells were then stained with anti-CD3-AlexaFluor700, anti-CD56-PE-Cy7, and anti-CD16-allophycocyanin (APC)-Cy7 (BD); fixed with Perm A; permeabilized using Perm B (Invitrogen); and stained with anti-IFN-γ–APC and anti-MIP-1β–PE (BD). The cells were fixed with a 2% paraformaldehyde solution and analyzed by flow cytometry.
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