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7 protocols using dulbecco s modified eagle s medium

1

Cultivating Rickettsia-Infected Insect Cells

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African green monkey kidney epithelial cells (Vero) were cultured in Dulbecco's modified Eagle's medium (BD Biosciences, Franklin Lake, NJ, USA) with 10% fetal bovine serum and 1% penicillin-streptomycin (MP Biomedicals, Santa Ana, CA, USA) at 37°C in a 5% CO2 environment. Three frozen insects from a Rickettsia-positive pool (South Dakota #2) were surface sterilized with 70% ethanol and 10% bleach and placed into tubes of ceramic beads containing 500 μL of cell medium (lysis matrix D; MP Biomedicals). The insects were then macerated at low speed on a BeadBug homogenizer (Benchmark Scientific, Sayreville, NJ, USA) and the homogenate was inoculated into a T25 flask that was ∼50% confluent. Three days after the initial inoculation, the medium was changed to antibiotic free medium and subsequent media changes occurred every 3–4 days. At multiple points following inoculation, culture supernatants and cells were checked for the presence of Rickettsia by PCR and Giemsa staining.
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2

GST-pull down assay for hnRNP A1 and Transportin 1

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SK-N-SH cells were cultured in Dulbecco’s Modified Eagle’s medium (BD Biosciences) supplemented with 10% fetal bovine serum, 100 U/mL penicillin G and 100 μg/mL streptomycin, at 37°C under 5% CO
2. Cells were harvested and lysed with CytoBuster™ Protein Extraction Reagent (Millipore), containing inhibitor cocktail, homogenized for a few seconds with a handheld homogenizer and spun at 16,000 × g for 5 minutes. Supernatants were used for GST-pull down assays. Glutathione-Sepharose 4B beads coupled with GST-hnRNP A1 (WT or variant), which includes the Transportin 1-binding domain, were incubated for 1 h at 4°C with 600 μL of the cell lysates in CytoBuster™ Protein Extraction Reagent and protease inhibitors. After washing the beads three times with 600 μL of 10 mM PBS (10 mM Na
2HPO
4, 140 mM NaCl, 2.7 mM KCl, 1.8 mM KH
2PO
4, pH 7.4) and protease inhibitors, proteins bound to the beads were analyzed by 8–16% SDS-PAGE followed by immunoblotting with rabbit polyclonal GST antibody (1:1000, Millipore, catalog #06-332), mouse monoclonal Transportin 1 antibody (1:1000, Millipore, catalog #05-1515) and mouse monoclonal TDP-43 antibody(1:1000, Millipore, catalog #MABN45). The immunoreactive bands were visualized using enhanced chemiluminescence.
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3

Xenograft Model of Oral Cancer

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Based on protocols approved by the Institutional Animal Care and Use Committee of MUSC, CAL 27 cells, grown to 50-60% confluence, were suspended in Dulbecco’s Modified Eagle’s Medium containing 10% FBS / Matrigel (1:1 ratio; BD Biosciences, Bedford, MA) at 750,000 cells per 50 μl and injected submucosally in the floor-of-mouth of anesthetized eight-week-old nude mice (NCI Athymic Ncr-nu/nu strain; n=3/group for in vivo and ex vivo imaging studies; Charles River, Bar Harbor, ME) or NOD-SCID mice (NOD.CB17-Prkdcscid strain; n=2/group or n=3-4/group for single or three-dose bioactivity studies, respectively; Jackson Laboratory, Bar Harbor, ME). Oral tumors were allowed to grow for 14 days before treatment was administered. Of note, tumor cell dose was optimized for the CAL 27 cell line to produce tumors corresponding to an average volume of ~70-mm3, within this time period.
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4

Transwell Assay for Y79 Cell Migration

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The Transwell experiment, which evaluated the migration ability of Y79 cells in various groups, was performed. Incubation medium (with 1 mM MgCl2; 200 µl) containing 1×104 cells was seeded into the upper Transwell chambers (Costar; Corning Incorporated, Corning, NY, USA). The cells were subsequently incubated at 37°C for 48 h to allow cell migration through the porous membrane (pore size, 8 µm). Upon completion of the culture, cells remaining on the upper surface of the chamber were completely removed using a cotton swab. The lower surfaces of the membranes were fixed with 4% paraformaldehyde for 20 min and stained in a solution containing 0.5% (w/v) crystal violet for 5–10 min at room temperature. Subsequent to being washed with ddH2O, results of different groups were observed using the Olympus CX41 microscope (Olympus Corporation, Tokyo, Japan) at ×200 magnification and the numbers of cells were determined using Image-Pro Plus 6.0 software (Nikon Corporation, Tokyo, Japan). The invasion ability of Y79 cells was then measured as aforementioned, with polycarbonate membranes pre-coated with 100 µl Matrigel (in 0.8 µg/µl Dulbecco's modified Eagle's medium; BD Biosciences, San Jose, CA, USA) at 37°C for 2 h to form a reconstituted basement membrane.
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5

Xenograft Tumor Model from MKN45 Cells

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MKN45 cells were purchased from the American Type Culture Collection (ATCC; Manassas, VA, USA). All cells were cultured at 37°C in 5% CO2 atmosphere in appropriate tissue culture medium and passaged for no longer than 2 months. Cells were used for experiments (in vitro and in vivo) when they reached ~80% confluence.
In our study, MKN45 cells were used to generate xenograft tumor model on nude mice. All the animal studies were conducted in compliance with the guidance for the care and use of laboratory animals and were approved by the Life Science Research Ethics Committee of the Institute of Southwest Hospital, Third Military Medical University (Chongqing, People’s Republic of China). Nude mice were obtained from the Southwest Hospital Animal Center of the Third Military Medical University. For the animal tumor models, 6- to 8-week-old female nude mice were selected, and tumors were established by subcutaneous injection of 1×106 MKN45 cells resuspended in 100 μL of 1:1 mixture of Dulbecco’s Modified Eagle’s Medium and Matrigel (BD Biosciences, Franklin Lakes, NJ, USA) into the rear flank of mice. The tumor sizes were monitored every 2 days, and the animals were subjected to in vivo experiments when the size of tumors was over 5 mm (about 15 days after inoculation).
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6

Cell Culture Protocols for Osteosarcoma Cell Lines

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MG63, U2OS, and 143B were purchased from Shanghai Zhong Qiao Xin Zhou Biotechnology (Shanghai, China). Human bone marrow mesenchymal stem cells (hMSCs), Saos-2, and HOS were purchased from Procell Biological Technology (Wuhan, China). Saos-2 cells were cultured in McCoy’s 5a medium (Procell Biological Technology) supplemented with 15% fetal bovine serum (FBS; BI, Kibbutz Beit Haemek, Israel). U2OS cells were grown in Dulbecco’s modified Eagle’s medium (BD Biosciences, Franklin Lakes, NJ, USA) containing 10% FBS (BI). 143B cells were cultured in Eagle modified essential medium (Shanghai Zhong Qiao Xin Zhou Biotechnology) supplemented 10% FBS (BI). MG63 and HOS cells were grown in minimum essential medium (Gibco, Grand Island, NY, USA) containing 10% FBS (BI). hMSCs were cultured in hMSC complete medium (Procell). All cell lines were maintained in an incubator at 37°C with 5% CO2. Cisplatin (DDP) was obtained from Meilun Biotechnology (Dalian, China). In experiments using cisplatin, cells were incubated with 5 μmol/L DDP for 24 h before the detection.
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7

Cytotoxicity and Apoptosis Assays

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LDH-cytotoxicity Assay Kit II was purchased from BioVision (Mountain View, CA, USA), APO-DIRECT kit from BD Biosciences (San Jose, CA, USA), Dulbecco's Modified Eagle's Medium (DMEM), Fetal Bovine Serum (FBS), Horse Serum (HS), penicillin, streptomycin, glutamine, deoxyribonuclease I, 3-(4,5-dimehyl-2-tiazolilo)-2,5-diphenyl-2H-tetrazolium bromide (MTT), Hoechst 33342, DTT, polyethylenoimine (PEI), Pluronic, dimethyl sulfoxide (DMSO), TRI-reagent, DNAse I and all other common reagents were from Sigma-Aldrich (St. Louis, MO, USA). High Capacity cDNA Reverse Transcription Kit and TaqMan Gene Expression Master Mix were from Applied Biosystems (Foster City, CA, USA). DAF-2 DA was purchased from Cayman Chemical Company (Michigan, USA). Fluo-4 AM and Rhod-2 AM was purchased from Thermo Fischer Scientific Inc. HPLC grade water was purchased were from Merck KGaA, Darmstadt, Germany. Huperzine A was purchased from ChromaDex, Inc. (Laguna Hills, CA). The reference compounds, lycopodine and annotinine, were obtained from the Department of Pharmacognosy and Molecular Basis of Phytotherapy, Medical University of Warsaw.
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