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8 protocols using anti cd45 bv605

1

Identification of Tumor-Infiltrating Immune Cells

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Tumor cells isolated from mice were thawed and stained for identification of myeloid or lymphoid cell subpopulations according to the procedure described by Rossowska et al. (30 (link)). Briefly, tumor-derived cells were stained with LIVE/DEAD Fixable Violet Dead Staining Kit (Thermo Fisher) and then stained with cocktails of fluorochrome-conjugated monoclonal antibodies: anti-CD3 PE-CF594, anti-CD19 PE-CF594, anti-CD49b PE-CF594 (all from BD Biosciences), anti-CD45 BV605, anti-CD11b PerCP-Cy5.5, anti-CD11c BV650, anti-F4/80 AlexaFluor 700, anti-Ly6C PE, anti-Ly6G APC-Cy7, anti-MHC II FITC, anti-CD86 PE-Cy7 (all from BioLegend) for myeloid cell identification, and anti-CD45 BV605, anti-CD3 BV650, anti-CD4 FITC, anti-CD8 APC/Fire 750, anti-CD25 PE, anti-CD44 PE-Cy7, anti-CD62L PerCP-Cy5.5 (all from BioLegend) for lymphocytes identification. Then, the cells were fixed using the FoxP3 Fixation Permeabilization Staining Kit (eBioscience). Tumor cells stained with myeloid or lymphocyte cocktail were additionally incubated with anti-CD206 APC (BioLegend) or anti-FoxP3 APC (eBioscience) antibodies, respectively. The analysis was performed using a FACS Fortessa flow cytometer with Diva software (Becton Dickinson).
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2

Phagocytosis Assay in Bryo-1 Treated Mice

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C57BL/6 mice (8–10 weeks old) were treated with 35 nmol/kg bryo-1 on days 0, 2, and 3 via IP injection. On day 4, the brains were prepared as described above, and the phagocytosis assay was performed as described (69 (link)). The dissociated cells were resuspended in DMEM/F-12 containing 10% (v/v) FBS in a conical tube, and pHrodo-conjugated myelin (3 μg) was added. The cells were incubated for 4 hours at 37°C, washed sequentially with PBS and PBS containing 2% FBS and 2.5 mM EDTA, and transferred to a 96-well conical-bottom plate. The cells were incubated with TruStain Fc and Zombie NIR (1:1500) for 20 min at RT. The cells were washed, stained with anti-CD11b BV510 (1:400; clone M1/70; Biolegend), anti-CD45 BV605 (1:400; clone 30–11; Biolegend), anti-Ly6G (1:400; clone 1A8; Biolegend), and anti-Clec12a APC (1:400; clone 5D3; Biolegend) antibodies for 30 min at RT, washed twice, and analyzed by flow cytometry on a Cytek Aurora Spectral flow cytometer.
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3

Comprehensive Immune Profiling of Tumor and Spleen Cells

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Tumor cells and spleen cells isolated from mice were thawed and stained for identification of myeloid or lymphoid cell subpopulations according to the procedure described previously (46 (link)). Briefly, tumor single-cell suspensions were stained with the LIVE/DEAD Fixable Violet Dead Staining Kit (Thermo Fisher Scientific, Inc.) and then labelled with cocktails of fluorochrome-conjugated monoclonal antibodies: anti-CD3 PE-CF594, anti-CD19 PE-CF594, anti-CD49b PE-CF594 (all from BD Biosciences), anti-CD45 BV605, anti-CD11b PerCP-Cy5.5, anti-CD11c BV650, anti-F4/80 Alexa Fluor 700, anti-Ly6C PE, anti-Ly6G APC-Cy7, anti-MHC II FITC, anti-CD80 PE-Cy7 (all from BioLegend) for myeloid cell identification, and anti-CD45 BV605, anti-CD3 BV650, anti-CD4 FITC, anti-CD8 APC/Fire 750, anti-CD25 PE (all from BioLegend) for lymphocyte identification. Then, the cells were fixed using the Foxp3/Transcription Factor Staining Buffer Set (eBioscience). Cells stained with myeloid or lymphocyte cocktail were additionally incubated with anti-CD206 APC (BioLegend) or anti-FoxP3 APC (eBioscience) antibodies, respectively. In spleen single cell suspension only the lymphocyte identification was performed according to the procedure described above. The analysis was performed using a FACS Fortessa flow cytometer with Diva software (Becton Dickinson).
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4

Multicolor Flow Cytometry Panel for Lung Myeloid Cells

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Dissociated lung cells were resuspended in 100 μL staining buffer and blocked with anti-CD16/32 antibody (BioLegend) followed by staining using fluorescently-tagged antibodies: anti-CD45 BV605 (BioLegend), anti-CD3 PE-Cy7 (BioLegend), anti-CD11b (BioLegend), anti-IA/IE BV650 (BioLegend), anti-CD11c (BioLegend), anti-CD24 AF488 (BioLegend), anti-CD193 PE (BioLegend), anti-GR1 AF700 (BioLegend), anti-CD64 APC (BioLegend), anti-Siglec-F PE-CF594 (BD Bioscience), along with a viability indicator Ghost Dye Violet 510 (Tonbo Bioscience). The list of antibodies, sources, and identifier (Cat#) information is summarized in the key resources table. The data acquisition was performed in LSRII Fortessa by collecting a total of 100,000 events (∼90% single cell events/samples) and analyzed using FCS Express 7 software. Dead cells were excluded based on Ghost dye+ (dead cells) and Ghost dye¯ live cells were included for further gating. Compensation for each flow cytometer experiment was performed with unstained and all single-color controls using OneComp eBeads (Thermo Fisher Scientific). Representative dot plots of a multicolor flow cytometry panel used to identify myeloid cell subsets in lung tissues from mice were provided as described (Figure S2).60 (link)
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5

Isolation of Salivary Gland Cells

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Human salivary gland tissues were processed into single-cell suspensions as described above and then filtered through a 35 μm nylon mesh (Corning). Cells were resuspended in phosphate-buffered saline supplemented with 0.1% bovine serum albumin, 10 mM HEPES, 25 mM EDTA, and 10 μM Y-27632 to avoid anoikis of epithelial cells. Single-cell suspensions were preincubated with human TruStain FcX (#4322302, Biolegend), and stained with primary antibodies for 30 min at 4 °C. Dead cells were stained with zombie violet (#423114, Biolegend) and gated out. Stained cells were analyzed using LSRFortessa or sorted using FACSAria II (BD, Franklin Lakes, NJ, USA). Data were collected via FACSDiva software (BD) and analyzed using the FlowJo software. The following antibodies were used; anti-CD45-BV605 (#368524, 1:50, Biolegend), anti-CD31-FITC (#303104, 1:20, Biolegend), anti-CD49f-PE-Cy7 (#313621, 1:20, Biolegend), and anti-CD26-PE (#302705, 1:20, Biolegend).
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6

Multicolor Flow Cytometry Analysis of Tumor-Infiltrating Lymphocytes

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Nine days after the treatment of MC38 tumours with indicated compounds, tumor infiltrating lymphocytes (TILs) were isolated and stained. For stimulation, cells were incubated with cell stimulation cocktail (PMA and Ionomycin) plus protein transport inhibitor (Brefeldin A and Menesin) for 4 hrs. Cells were analysed by multicolour flow cytometry (BD LSR Fortessa X-20). Antibodies: anti-CD45 BV605 (#103140, Biolegend); anti-CD3 BV875 (#100355, Biolegend); anti-CD4 BV650 (#100469, Biolegend); anti-CD8 (#100784, Biolegend); anti-FOXP3 PerCP-Cy5.5 (#563902, BD); anti-TNFα APC (#506308, Biolegend); anti-IFNγ FITC (#505806, Biolegend); anti-IL-2 BV510 (#503833, Biolegend); anti-IL10 PerCP-Cy5.5 (#505028, Biolegend). All analyses were performed using FlowJo_V10.6.1 software (Tree Star). Gating strategy: gate cells exclude dead cells and debris based on cells size, then gate live cells based on Live-Dead NIR negative cells, then gate CD45+ cells, then gate CD45+CD3+ cells, then gate CD45+CD3+CD8+ cells and CD45+CD3+CD4+ cells. Cytokine expression was determined in the populations of CD45+CD3+cells.
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7

Multicolor Flow Cytometry Analysis of Tumor-Infiltrating Lymphocytes

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Nine days after the treatment of MC38 tumours with indicated compounds, tumor infiltrating lymphocytes (TILs) were isolated and stained. For stimulation, cells were incubated with cell stimulation cocktail (PMA and Ionomycin) plus protein transport inhibitor (Brefeldin A and Menesin) for 4 hrs. Cells were analysed by multicolour flow cytometry (BD LSR Fortessa X-20). Antibodies: anti-CD45 BV605 (#103140, Biolegend); anti-CD3 BV875 (#100355, Biolegend); anti-CD4 BV650 (#100469, Biolegend); anti-CD8 (#100784, Biolegend); anti-FOXP3 PerCP-Cy5.5 (#563902, BD); anti-TNFα APC (#506308, Biolegend); anti-IFNγ FITC (#505806, Biolegend); anti-IL-2 BV510 (#503833, Biolegend); anti-IL10 PerCP-Cy5.5 (#505028, Biolegend). All analyses were performed using FlowJo_V10.6.1 software (Tree Star). Gating strategy: gate cells exclude dead cells and debris based on cells size, then gate live cells based on Live-Dead NIR negative cells, then gate CD45+ cells, then gate CD45+CD3+ cells, then gate CD45+CD3+CD8+ cells and CD45+CD3+CD4+ cells. Cytokine expression was determined in the populations of CD45+CD3+cells.
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8

Multiparametric Immune Cell Analysis

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A suspension of stimulated splenocytes (2 × 105 cells/well) was applied to flat-bottom 96-well plates (Nunc) with previously prepared single-layer MC38 cell culture (the ratio of tumor cells to splenocytes was 1 : 5). APC conjugated anti-CD107a monoclonal antibody, PMA (50 mg/ml, Sigma-Aldrich), ionomycin (1 μg/ml, Sigma-Aldrich), and rh IL-2 (200 U/ml, ImmunoTools) were added to the wells. After 2 h at 37°C, cells were harvested and labeled with fluorochrome-conjugated monoclonal antibodies: anti-CD45 BV605, anti-CD4 FITC, anti-CD8 APC-Fire, and anti-NK1.1 PE-Dazzle (all from BioLegend). Cells were incubated with antibodies for 45 min at 4°C. To identify dead cells, 50 μl of DAPI dye solution (1 μg/ml, Molecular Probes) was added to the samples immediately before analysis. Samples were analyzed by a BD LSRFortessa Cell Analyzer (Becton Dickinson, Cat. No. 649225B5) with the BD FACSDiva software 8.0 and the NovoExpress software version 1.3.0 (ACEA Biosciences, Inc.).
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