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14 protocols using anti rip3

1

Protein Phosphorylation Analysis in GCs

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Protein isolation and Western Blot were conducted as previously described26 ,27 (link). In brief, GCs were lysed after 1 to 5 days of culture using RIPA buffer containing protease and phosphatase inhibitors (PI, Thermo Fisher Scientific, Waltham, USA). A total of 10 µg protein per lane was loaded on a 12 % SDS gel and run under constant current (30 mA/gel). After blotting (100 V, 65 min) and blocking with 5 % non-fat dry milk in Tris-buffered saline with Tween 20 (TBS-T, 50 mM Tris-HCl, 150 mM NaCl, 0.1 % Tween 20, pH 7.4), anti-pRIP1(S166), anti-pRIP3(S227) both from Cell Signaling Technology (Danvers, MA, USA) and anti-pMLKL(T357/S358) antibodies were administered to decorate these phosphorylated proteins. To visualize specific binding, HRP-conjugated goat anti-rabbit antibody (Jackson ImmunoResearch Inc., West Grove, PA, USA) was used. As loading controls, anti-RIP1, anti-RIP3 (both from Cell Signaling Technology, Danvers, MA, USA), anti-MLKL (ab184718, Abcam, Cambridge, UK) and anti-β-actin (A5441, Sigma-Aldrich, St. Louis, MI, USA) antibodies were used. Preabsorption of anti-pMLKL was previously published27 (link). All experiments were carried out five times if not described otherwise.
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2

Western Blot Analysis of Apoptosis Markers

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Cells were harvested and lysed as previously described [67 (link)]. Cell lysates were separated by 7.5% or 12.5% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene difluoride (PVDF) membranes (Merck Millipore, Burlington, MA, USA). To detect the protein of interest, anti-PARP (1:3000), anti-caspase-3 (1:1000), anti-cleaved caspase-3 (1:1000), anti-histone H3 (1:3000), anti-Phospho-RIP1 (S166) (1:1000), anti-RIP3 (1:1000), anti-β-actin (1:3000) (all from Cell Signaling Technology, Danvers, MA, USA), Phospho-RIP3 (Abcam, Cambridge, UK), and RIP1 (BD Biosciences) were used as primary antibodies. HRP-conjugated goat anti-mouse and anti-rabbit IgG (Santa Cruz Biotechnology, Dallas, TX, USA) were used as secondary antibodies.
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3

Western Blot Profiling of Cell Death Pathways

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Cells were harvested and lysed with lysis buffer: 150 mM NaCl, 10 mM EDTA, 10 mM Tris, pH 7.4, 1% X-100 Triton. Cell lysates were subjected to SDS-PAGE, transferred onto a pure nitrocellulose membrane (BioRad) and blocked with 5% fat-free milk. Primary antibodies for immunoblotting included: anti-AIF1 (1:1000, Cell Signaling), anti-RIP (1:1000, Santa Cruz Biotechnology), anti-RIP3 (1:1000, Cell Signaling), anti-Caspase3 (1:1000, Cell Signaling), anti-Caspase 8 (1:1000, Cell Signaling), anti-Caspase 9 (1:1000, Cell Signaling), phosphorylated γ-H2AX (1:1000, Enzo Life Sciences), and β-actin (1:1000, Cell Signaling) as loading control. Membranes were incubated with horseradish peroxidase (HRP)-conjugated anti-mouse secondary antibody (1:10,000, Santa Cruz Biotechnology, cat#: sc-2005) or anti-rabbit secondary antibody (1: 10,000, AnaSpec Inc., cat#: AS-28177) for 1 h and chemi-luminescence signals were detected by HRP substrate (EMD Millipore). Pan-caspase inhibitor Q-VD-OPh (Sigma-Aldrich, MO) was at final concentration of 25 μM.
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4

Immunoblotting Analysis of Pyroptosis Proteins

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Antibodies used for immunoblotting analysis were the following: anti-IL-1β (#12703), anti-caspase-1 (#3866), anti-caspase-4 (#4450), anti-caspase-5 (#46680), anti-MLKL (#14993), anti-phospho-MLKL (#91689), anti-RIP-3 (#13526), anti-phospho-RIP3 (#93654) and anti-Myc-tag (#2278) (Cell Signaling Technology); and anti-Flag (Sigma-Aldrich, F1804), anti-Bcl-2 (Santa Cruz Biotechnology, sc-783), anti-actin conjugated to horseradish peroxidase (Sigma-Aldrich, A3854), anti-GAPDH conjugated to horseradish peroxidase (Proteintech, HRP-60004), goat anti-rabbit HRP-linked antibody (#7074), and horse anti-mouse HRP-linked antibody (#7076) (Cell Signaling Technology). Anti-GSDMD was from (Novusbio, NBP2-33422). The LPS, nigericin and Z-VAD-FMK caspase inhibitor were purchased from Sigma-Aldrich. SYTOX Green nucleic acid stain was purchased from Invitrogen. Smac mimetic was from Tocris. Caspase-1, caspase-3 and Bcl-2 recombinant proteins were from EMD Millipore. Human TNFα was from R&D System. Smac mimic was from APExBIO.
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5

Vinblastine-Induced RIP1 and MLKL Interaction

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H9c2 cells were treated with DMSO or the indicated concentrations of vinblastine for 48 h. Cells were harvested in IP lysis buffer (Cat. No.87788, Thermo Scientific). Cell extracts were pre-cleared with 40 μL of protein A/G-agarose beads (sc-2003, Santa Cruz Biotechnology), and immunoprecipitated with 2 μg of anti-RIP3 (cat#95702, Cell Signaling Technology) or normal rabbit IgG (cat#NI01, Calbiochem) at 4 °C overnight, and then incubated with 40 μL of proteins A/G-agarose beads at 4 °C for 2 h as described previously [32 (link)]. Immunocomplexes were resolved by SDS-PAGE and co-immunoprecipitated protein was disclosed using RIP1 and MLKL, respectively.
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6

Antibodies for Immunoblotting and Immunofluorescence

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Antibodies used in immunoblotting and immunofluorescence: anti-MLKL (Abcam, ab184718, 1:2000), anti-RIP3 (Cell Signaling Technology, 13526, 1:1000), anti-ACTIN (Santa Cruz Biotechnology, 47778, 1:5000), anti-VINCULIN (Sigma-Aldrich, V9131, 1:5000), anti-PARP (Cell Signaling Technology, 9542, 1:1000), anti-AP2a (BD biosciences, 610501, 1:1000), anti-Caspase-3 (Cell Signaling Technology, 9662, 1:1000), anti-Caspase-8 (Cell Signaling Technology, 9746, 1:1000), anti-FADD (BD biosciences, 610400, 1:1000), anti-DR5 (Abcam, ab199357, 1:1000), anti-EGFR (Abcam, ab2430, 1:1000), anti-p-ERK (Cell Signaling Technology, 9101, 1:1000), anti-p-AKT (Cell Signaling Technology, 9271, 1:1000), anti-p-p38 (Cell Signaling Technology, 9215, 1:1000) and anti-GST (Abcam, ab9085, 1:500). TNF-α and zVAD were purchased from R&D Systems. Etoposide and Dynasore were purchased from Sigma-Aldrich. SMAC mimetic (LCL-161) was purchased from Adooq Bioscience. 4 hydroxytamoxifen was purchased from Sigma-Aldrich.
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7

Comprehensive Necroptosis Signaling Pathway

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Anti‐RIP1 (#3493), anti‐RIP2 (#4142), anti‐RIP3 (#13526), anti‐p‐RIP1 (#44590), anti‐MLKL (#14993), anti‐p‐MLKL (#91689), anti‐caspase‐8 (#4790), anti‐cleaved caspase‐8 (#9496), anti‐PARP (#9532), anti‐GSDMD (#96458), anti‐caspase‐8 (#9746), anti‐Myc 9B11 (#2276), anti‐GFP (#2956) (Cell Signaling Technology), anti‐actin (#MAB1501, MILLIPORE), anti‐IL18 (PM014, MBL), and anti‐FLAG antibodies (F7425, Sigma‐Aldrich) were obtained from the indicated suppliers. The following inhibitors, all obtained from Calbiochem, were used at the indicated final concentrations: z‐VAD‐FMK, 10 μM; RIP1 kinase inhibitor III, 5 μM; GSK872 (RIPK3 inhibitor), 5 μM; and caspase‐8 inhibitor II, 10 μM. Staurosporine was purchased from Sigma.
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8

Labeling of Anti-MCMV Protein with FITC

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Anti-MCMV early antigen (EA) [38 (link)] was labeled with fluorescein isothiocyanate (FITC; Sigma-Aldrich, St. Louis, MO) as previously described [39 (link)]. Anti-RPE65 was kindly provided by Dr. Michael Redmond (National Eye Institute, National Institutes of Health, Bethesda, MD). Anti-caspase 1, antiphosphorylated NFκB (p-p65), anti-RIP1, anti-RIP3, goat anti-rabbit immunoglobulin G horseradish peroxidase (IgG-HRP), and goat anti-mouse IgG-HRP were purchased from Cell Signaling Technology, Inc. (Danvers, MA). Anti-β-actin was purchased from Sigma-Aldrich (St. Louis, MO). Texas Red–labeled anti-rabbit IgG was obtained from Vector Laboratories (Burlingame, CA).
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9

Western Blot Antibody Optimization Protocol

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Monoclonal anti-Caspase-12 antibody was purchased from Sigma-Aldrich (St. Louis, MO, USA). Anti-cleaved caspase-3, anti-PUMA, anti-HistonH2A, anti-AIF, anti-RIP1, anti-RIP3, anti-MLKL, anti-p53, anti-COX IV and anti-Lamin B were from Cell Signaling Technology, Inc. (Danvers, MA, USA). Rabbit anti-RPE65 (specific for RPE cells) was from Abcam (Cambridge, MA, USA). The preparation and use of FITC-labeled anti-MCMV EA and biotin-anti-EA has been described previously [24 (link)]. Anti-β-actin was from Sigma-Aldrich Corp. (St. Louis, MO, USA). Texas red avidin D, DyLight 594 goat anti-rabbit IgG antibody and DyLight 488 horse anti-mouse IgG antibody were from Vector Laboratories, Inc. (Burlingame, CA, USA). Goat anti-rabbit IgG-HRP, and goat anti-mouse IgG-HRP were from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA, USA). BCA assay kit, NE-PERTM Nuclear and Cytoplasmic Extraction Reagents (78833) and Mitochondria Isolation Kit for Tissue (89801) were purchased from Thermo Fisher Scientific (Waltham, MA, USA). TUNEL assay kit was from Roche (Indianapolis, IN, USA).
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10

Protein Expression Analysis of DRG, Spinal Cord, and Hippocampus

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Tissues of the DRG, SC and HIP were lysed with lysis buffer (Cell Signaling Technology, Danvers, Massachusetts, USA), and the concentrations were detected using a BCA Protein Assay kit (Thermo Fisher Scientific, Rockford, Illinois, USA). Total proteins (30 μg) were separated and transferred onto polyvinylidene difluoride membranes (Millipore, Billerica, Massachusetts, USA). Membranes were blocked with 5% nonfat dry milk for 1 h and incubated with the primary antibodies overnight. The membranes were incubated with the following primary antibodies: anti-RIP1 (1 : 1000 dilution; Cell Signaling Technology), anti-RIP3 (1 : 1000 dilution; Cell Signaling Technology), anti-PD1 (1 : 1000 dilution; Abcam, Cambridge, Massachusetts, USA) and anti-β-actin (1 : 1000 dilution; Abcam) overnight at 4°C. After incubation with the secondary antibody, the results were detected using an ECL chemiluminescence kit (Beyotime, Shanghai, China).
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