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4 protocols using anti hp1α

1

Comprehensive Immunoblotting and Immunofluorescence Antibodies

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The following primary antibodies were used in this study: anti-H3K9me3 (Abcam, cat# ab8898; IF 1:1000, WB 1:2000), anti-H3K9me2 (Active Motif, cat# 39239, IF 1:1000), anti-Lamin A/C (Santa Cruz, cat# sc-376248; IF 1:500), anti-Lamin B1 (Abcam, cat# ab16048; IF 1:1000), anti-GFP (Abcam, cat# ab290; WB 1:1000, IP 1:200), Normal Rabbit IgG (Cell Signaling, cat# 2729; IP 1:200), anti-HP1α (Abcam, cat# 77256; IF, WB 1:1000), anti-HP1β (Abcam, cat# ab10478; IF, WB 1:1000), anti-HP1γ (Santa Cruz, cat# sc-398562; IF 1:500, WB 1:1000), anti-PRR14 (Proteintech, cat# 22819-1-AP; WB 1:1000), anti-β-Actin (8H10D10) (Cell Signaling, cat# 3700S; WB 1:5000), anti-Histone H3 (Abcam, cat# ab1791; WB 1:10,000), and anti-GAPDH (D4C6R) (Cell Signaling, cat# 51332; WB 1:1000).
The following secondary antibodies from ThermoFisher Scientific/Invitrogen were used: Donkey anti-Rabbit Alexa Fluor 568 (cat# A10042, IF 1:1000), Donkey anti-Mouse Alexa Fluor 488 (cat# A10037, IF 1:1000), Donkey anti-Rabbit Alexa Fluor 647 (cat# A31573, IF 1:1000), Donkey anti-Mouse Alexa Fluor 647 (cat# A31571, IF 1:1000); and HRP-linked anti-Rabbit IgG and HRP-linked anti-Mouse IgG (Cell Signaling, cat# 7074 and 7076; WB 1:5,000). IF – immunofluorescence, WB – Western Blot, IP – immunoprecipitation.
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2

Chromosome Spread and FISH Analysis

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Preparation of chromosome spreads and subsequent fluorescence in situ hybridization (FISH) was described previously [46 (link)], except that we enriched for mitotic cells by treatment with 300 nM TN-16 (FUJIFILM Wako Pure Chemical Corp., Doshomachi Osaka, Japan) for 2 h. An evaluation of HAC formation was performed, as described previously [33 (link)].
The ChIP and subsequent qPCR and competitive PCR were described previously [45 (link)]. Anti-HP1α was purchased from abcam (Cambridge, UK; ab77256). PCR primers were from the literature [40 (link)], except N11F5 (5′-GGGATCACTAGCAATAAAAGGTAGAC-3′) and N11R6 (5′-TCCTTCTGTCTCGTTTTTATGGC-3′) used for competitive PCR of tetO vs. lacO, and N11F8 (5′-AGACAGAAGCATGCTCAGAAAC-3′) and N11R11 (5′-CTACCTTTTATTGCTAGTGATCCC-3′) for CENP-B box wild-type vs. mutant.
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3

Western Blot Analysis of Histone Modifications

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The total proteins of both cell lines were extracted and measured by Western blot analysis with the following antibodies: anti-H3K9me3 (Abcam, MA, USA; 1:1000), anti-HP1α (Abcam, MA, USA; 1:2000), anti-Ac-H3 (CST, 1:1000) and anti-β-Tubulin (Beyotime Biotechnology, 1:1000). The cells were washed triply with ice-cold PBS and treated with RIPA lysis buffer with 100 mM phenylmethanesulfonyl fluoride (PMSF) (Beyotime). An equal amount of total protein was subjected to 12% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a polyvinylidene fluoride (PVDF) membrane (Millipore, Bedford, MA, USA) then probed with primary antibodies overnight at 4°C. The membranes were then incubated for 1 h with the secondary HRP-conjugated antibodies (1:1000; Cell Signaling Technology). β-Tubulin was used for the loading control. The protein bands were visualized using the ChemiDoc XRS system (Bio-Rad Laboratories, Hercules, CA, USA) and their densities were measured using the Quantity One software (Bio-Rad Laboratories).
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4

Comprehensive Profiling of ICC Epigenetics

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Antibodies included rabbit anti-CyclinD1 (Abcam, Cambridge, MA, USA, ab6152), anti-H3K9me3 (Abcam, ab8898), anti-CDK6 (Abcam, ab108357), polyclonal anti-SUV39H1 (Proteintech, Wuhan, China, 10,574–1-AP), mouse monoclonal anti-Dicer (Abcam, ab14601), rabbit polyclonal anti-Dnmt1 (Santa Cruz Biotech, Dallas, TX, USA, sc-20,701), polyclonal anti-Dnmt3a (Santa Cruz Biotech, sc-20,703), polyclonal anti-Dnmt3b (Santa Cruz Biotech, sc-20,704), SUV39H1 (Proteintech, 10,574–1-AP), goat polyclonal anti-HP1α (Abcam, ab77256), rabbit polyclonal anti-Histone3 (Proteintech, 17,168–1-AP), mouse monoclonal anti-β-actin (BOSTER, Wuhan, China, BM0626), mouse monoclonal anti-GST (Proteintech, 66,001–1-Ig) and IgG from healthy animals (Beyotime, Shanghai, China, A7007).
Fourteen pairs of human ICC and adjacent non-tumor tissues were obtained from the Department of Biliary-Pancreatic Surgery, Tongji Hospital of Huazhong University of Science and Technology (HUST, Hubei, China). Written informed consent was obtained from individual patients and the experimental protocol was approved by the Ethics Committee of the Tongji Hospital.
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