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Thermal cycler dice real time system version 4

Manufactured by Takara Bio

The Thermal Cycler Dice Real Time System version 4.2 is a laboratory instrument designed for real-time PCR (polymerase chain reaction) analysis. It is capable of performing precise temperature cycling required for DNA amplification and detection.

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2 protocols using thermal cycler dice real time system version 4

1

Real-Time PCR Analysis of iNOS mRNA

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The expression levels of iNOS mRNA in ACs and total BAL cells were determined by quantitative real‐time PCR (qRT‐PCR) as described previously.12 First‐strand cDNA was synthesized by PrimeScript RT Reagent Kit (Takara Bio, Shiga, Japan) with both oligo(dT) primer and random hexamers. Reverse transcription was performed with a TaKaRa PCR Thermal Cycler MP (TP3000, Takara Bio). The following sequences were used for iNOS and GAPDH. iNOS: forward primer, 5′‐GCACGGCAACACATTGAA‐3′; reverse primer, 5′‐TGAGGTTCTGAAGGCCTAAATC‐3′; GAPDH: forward primer, 5′‐GCACCGTCAAGGCTGAGAAC‐3′; reverse primer, 5′‐TGGTGAAGACGCCAGTGGA‐3′.
Diluted first‐strand cDNA product (4 μL) was used for amplification in a 25‐μL reaction solution containing 12.5 μL SYBR Premix Ex Taq II (Takara Bio) and 1 μL of each primer. DNA was amplified for 40 cycles of denaturation at 95°C for 5 seconds and annealed at 60°C for 30 seconds with the Takara Thermal Cycler Dice (TP900; Takara Bio). The data generated from each PCR reaction were analysed using Thermal Cycler Dice Real Time System version 4.2 (Takara Bio). The specificity of the reactions was determined by melting curve analysis. The relative expression of each gene of interest and GAPDH were calculated by the ΔΔCt method.
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2

Quantitative RT-PCR for DPP4 and FN

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The expression of DPP4 mRNA by BECs and the expression of FN mRNA by HFL-1 and BSMCs were determined by reverse transcription (RT), followed by real-time quantitative PCR as described previously [4 (link), 5 (link)]. First-strand cDNA was synthesized using the PrimeScript RT reagent Kit (TaKaRa) with both oligo(dT) primers and random hexamers.
Reverse transcription was performed with a TaKaRa PCR Thermal Cycler MP (TP3000). The following are the sequences of the primers used for amplification of DPP4, FN and GAPDH:

DPP4: forward primer, GCACGGCAACACATTGAA;

reverse primer, TGAGGTTCTGAAGGCCTAAATC;

FN: forward primer, CTTTGGTGCAGCACAACTTC;

reverse primer, CCTCCTCGAGTCTGAACCAA

GAPDH: forward primer, GCACCGTCAAGGCTGAGAAC;

reverse primer, TGGTGAAGACGCCAGTGGA.

DNA was amplified for 40 cycles of denaturation for 5 s at 95 °C and annealing for 30 s at 60 °C, using the TaKaRa Thermal Cycler Dice (TP900). The PCR assays were performed and analyzed using the Thermal Cycler Dice Real Time System version 4.2 (TaKaRa). The specificity of reactions was determined by melting curve analysis. The relative expression of each gene of interest and of GAPDH were calculated using the ΔΔCt method.
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