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5 protocols using ampk sirna

1

Regulation of FAIM in AML12 cells

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2 × 105 AML12 cells were seeded into 6-well plates with 100 pmol FAIM siRNA by Lipofectamine 3000 (L3000008, Invitrogen, USA) as indicated protocols by the supplier. The knockdown efficiency was verified by qRT-PCR and western blotting. Three siRNAs of FAIM and a scrambled control were purchased from Ribobio (siBDM1999A, Guangzhou, CHINA, the sequences could be found in Supplementary Table 2, siFAIM-2 was chosen in the experiments). AMPK siRNA (targeting mouse AMPK⍺1: 5′-ACAUAUGCUGCAGGUGGA-3′, GenePharma, Shanghai, CHINA)
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2

AMPK Knockdown in NIH 3T3 Cells

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AMPK siRNA was synthesized by Gene Pharma (Shanghai, China). Following the manufacturer’s instructions, cells were instantaneously transfected with Lipofectamine 2000 reagent (Invitrogen, ThermoFisher, Waltham, MA, USA). NIH 3T3 cells were cultured in six-well plates in DMEM (2 mL per well) without antibiotics or FBS, then transfected with 5 μL of 20 μM siRNA per well using 5 μL Lipofectamine 2000 reagent. The steps were as follows: each siRNA (5 μL) was diluted in 100 μL of OPTIMEM I reduced serum medium; 5 μL Lipofectamine was diluted in 100 μL of OPTIMEM I reduced serum medium; the transfection complexes (200 μL) were placed in 6-well culture plates and incubated at 37 °C in 5% CO2 for 24 h. AMPK activity, assessed by monitoring the phosphorylation of AMPK at Thr172, was significantly downregulated when NIH 3T3 cells were transfected with AMPK siRNA for 24 h (Figure 1C,D). All siRNA sequences used in this study are shown in Table 2. We chose Prakaa1-mus-1337 for the next stage of the experiment.
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Transfection of FLS with AMPK siRNA

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Transfection with siRNA was performed according to our previous report [26 (link)]. Briefly, FLS were transfected with 100 nM AMPK siRNA (Genepharma, Shanghai, China), 100 nM CPT1 siRNA, or scrambled siRNA (sc-156134 and sc-37007; Santa Cruz, CA, USA) using Lipofectamine 2000 Transfection Reagent (Invitrogen, Carlsbad, CA, USA) with reduced serum medium Opti-MEM. The mRNA and protein levels of AMPK were measured by immunoblot and real-time PCR analyses. AMPK sequence: siRNA1: 5′-GCACGAGUUGACUGGACAUTT, AUGUCCAGUCAACUCGUGCTT-3′, siRNA2: 5′-CCUUUCUGGUGUGGACUAUTT, AUAGUCCACACCAGAAAGGTT-3′, siRNA3: 5′-CCAUUCUUGGUUGCCGAAATT, UUUCGGCAACCAAGAAUGGTT-3′. After 6 h of transfection, the solution was exhausted and incubated in a cell culture medium for 24 h to validate the transfection efficiency.
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4

AMPK and GABARAPL1 Knockdown Protocols

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AMPK siRNA (5’-GGUUGGCAAACAUGAAUUGtt-3’) and non-targeting control siRNA were acquired from GenePharma (Shanghai, China). GABARAPL1 siRNA was purchase from Santa Cruz Biotechnology, Inc. (Dallas, TX, USA). Transfections were performed using Lipofectamine 2000 (Invitrogen) according to the recommended procedure. The cells were plated onto six-well dishes at a density of 4 × 105 cells per well the day before transfection. 3 μl Lipofectamine 2000 was combined with 4000 pmol (20 μl of a 20 μM stock) siRNA in a volume of 500 μl Opti-MEM Media (Gibco) and incubated for 20 min before being added to each well.
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5

Transfection and Treatment of HUVECs

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HUVECs cultured in collagen-coated 24-well plates were transfected with scrambled control siRNA, RhoA siRNA, AMPK siRNA or LKB1 siRNA (Genepharma, Shanghai, China) when cells reached 50% confluence. siRNA and RNA iMAX (Invitrogen, Camarillo, CA) were premixed in OPTI-medium (Invitrogen, Camarillo, CA) according to the manufacturer's instructions and then applied to cells. After 24 h transfection, OPTI-medium was replaced by complete HUVECs medium. Then HUVECs were treated with DPT for 30 min. All siRNA sense strands were listed in Table 1.
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