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3 protocols using facs wash buffer

1

Quantifying Nedd4 Levels in Rhesus Macaque PBMCs

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Intracellular levels of Nedd4 were measured by cytometry in rhesus macaque PBMC. Briefly, cells were pelleted by centrifugation at 1100×g for 5 min and were then resuspended in 100 µl FACS wash buffer (BD Biosciences) and stained with a cocktail of fluorochrome conjugated anti-CD3, anti-CD4 and anti-CD8 antibodies (BD Biosciences) at room temperature for 30 min. Cells were then washed with FACS wash buffer and resuspended in 250 µl Cytofix/Cytoperm buffer (BD Biosciences) for 15 min at 4°C. Following incubation, 2 ml of Perm/Wash buffer (BD Biosciences) was added to cells. Cells were pelleted by centrifugation and then resuspended in Perm/Wash buffer containing a rabbit anti-Nedd4 antibody (1∶100; Upstate, Charlottesville, VA). Cells were incubated for 15 min at 4°C, washed with 2 ml of Perm/Wash buffer followed by centrifugation and staining with a secondary goat anti-rabbit-RPE antibody (1∶50; Southern Biotech, Birmingham, AL) for 15 min at 4°C. Cells were washed with 2 ml of Perm/Wash buffer, centrifuged and then resuspended in 200 µl of FACS wash buffer (BD Biosciences). Acquisition of cells was performed by cytometry using a FACScalibur™ (BD Biosciences).
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2

Expanded TIL Immunophenotyping by Flow Cytometry

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Expanded TIL were stained in 100 µL of FACS Wash Buffer (Dulbecco’s Phosphate Buffered Saline 1× with 1% Bovine Serum Albumin) for 30 min using fluorochrome-conjugated monoclonal antibodies for CD3 (FITC), CD16 (PE), γδTCR (APC), CD56 (PE-Cy7), CD4 (PerCP Cy5.5), CD8 (PB), BLTA (PE), CD28 (PE-Cy7), TIM3 (APC) (all BD Bioscience, San Jose, CA), PD-1 (PerCP-Cy5.5) (Biolegend, San Diego, CA) and AQUA live/dead dye (Invitrogen, Carlsbad, CA). Stained cells were acquired using the BD FACScanto II and analyzed using FlowJo software v 10.1 (Tree star, Ashland, OR).
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3

Immune Profiling of Tumor Samples

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Fresh tumor samples were manually disaggregated between frosted-glass slides to obtain a single-cell suspension for analysis. Both the disaggregated tissue samples and expanded TIL were stained on ice in FACS Wash Buffer (Dulbecco’s Phosphate Buffered Saline 1× with 1% Bovine Serum Albumin) for 30 min with fluorochrome-conjugated monoclonal antibodies for CD3 FITC (SK7), CD4 PerCP-Cy5.5 (RPA-T4), CD8 PB (RPA-T8), CD16 PE (B159), CD28 PE-Cy7 (CD28.2), CD56 PE-Cy7 (B159), TCR y8 APC (B1), BTLA PE (J168 & J168–540), PD-1 BV650 (EH12) HLA-ABC PE (G46–2.6) (all BD Bioscience, San Jose, CA, USA), and PD-1 PerCP-Cy5.5 (EH12.2H7) (Biolegend, San Diego, CA, USA). Dead cells were excluded using the Aqua or Yellow LIVE/DEAD viability stain (ThermoFisher). Stained cells were fixed in 1% paraformaldehyde solution for 20 min at RT. Samples were acquired using the BD FACSCanto™ II or BD LSRFortessa X-20 and analyzed using FlowJo Software v10.5 (Tree Star). Subpopulations were excluded from analysis if less than 100 events.
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