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4 protocols using nupage 4 12 bistris mini protein gels

1

Western Blot Protein Analysis Protocol

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Cells were harvested and lysed in RIPA buffer: 20 mM Tris-HCl (pH 7.5), 150 mM NaCl, 1 mM Na2EDTA, 1 mM EGTA, 1% NP-40, 1% sodium deoxycholate, 2.5 mM sodium pyrophosphate, 1 mM beta-glycerophosphate, 1 mM Na3VO4, 1 µg/mL leupeptin (Cell Signaling Technology, Danvers, MA, USA) supplemented with both protease and phosphatase inhibitors (Roche Diagnostics, Rotkreuz, Switzerland). To ensure lysis, cells were sonicated with Diagenode Bioruptor Plus for 10 min (30 s on/30 s off cycle) at 4 °C and subsequently centrifuged at 4 °C at 13,000 rpm. Protein concentration was determined by the BCA protein assay (Thermo Fisher Scientific, Waltham, MA, USA) and an equal amount of protein was mixed with 4x NuPAGE LDS Sample Buffer (Invitrogen, Waltham, MA, USA) and 10× NuPAGE Reducing Agent (Invitrogen). Samples were heated at 70 °C for 10 min prior separation on NuPAGE 4–12% BisTris Mini Protein gels (Invitrogen) and NuPAGE MOPS SDS Running Buffer (Invitrogen). Proteins were subsequently transferred to polyvinylidene fluoride (PVDF) membrane via iBlot Dry Blotting System (Thermo Fisher Scientific, Waltham, MA, USA). Membranes were incubated with the appropriate antibodies and imaged with Bio-rad ChemiDoc Imaging System using Western Lighting Plus ECL (PerkinElmer, Waltham, MA, USA). The list of antibodies and their sources can be found in Supplementary Table S2.
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2

Immunoblotting of Protein Extracts

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Immunoblotting was performed as previously described.(11 (link),18 (link)) Protein extracts were prepared from cLPMNCs (2 × 106 cells) and human DCs (1 × 106 cells).(11 (link),18 (link)) Protein extracts (10 μg) were applied to NuPAGE 4–12% Bis-Tris Mini Protein Gels (Invitrogen, Carlsbad, CA), followed by transfer to a nitrocellulose membrane (Invitrogen). Mouse anti-p-IκBα Ab (CST), rabbit anti-LC3 Ab (MBL), and goat anti-actin Ab (Santa Cruz Biotechnology, Dallas, TX) were used as primary Abs.
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3

Quantitative Cas9 Release from CRISPR-AuNP

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CRISPR-AuNP were synthesized as previously described. After synthesis, the nanoformulation was pelleted (5 krcf, 45 minutes, 4°C) and supernatant removed. Particles were then resuspended in 5 mM BME in DPBS for overnight incubation at 4°C to release RNP from the Au core. Au cores were removed from the supernatant by centrifugation, then SDS-PAGE was performed using NuPAGE 4-12% Bis-Tris Mini Protein Gels (Invitrogen) according to the manufacturer’s protocol. Gels were stained with SimplyBlue SafeStain (LC6060) using the manufacturer’s protocol and imaged using an Invitrogen iBright Imaging System. Band intensity was quantified using ImageJ software (version: 1.51j8) and compared to a standard curve generated with known amounts of Cas9 nuclease.
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4

Western Blot Protein Analysis Protocol

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Cells were harvested and lysed in RIPA buffer, supplemented with both protease and phosphatase inhibitors (Roche Diagnostics, Rotkreuz, Switzerland): 20 mM Tris-HCl (pH 7.5), 150 mM NaCl, 1 mM Na2EDTA, 1 mM EGTA, 1% NP-40, 1% sodium deoxycholate, 2.5 mM sodium pyrophosphate, 1 mM beta-glycerophosphate, 1 mM Na3VO4, 1 µg/mL leupeptin (Cell Signaling Technology, Danvers, MA, USA). To ensure lysis, cells were sonicated with Diagenode Bioruptor Plus for 10 min (30 s on/30 s off cycle) at 4 °C and subsequently centrifuged at 4 °C at 13,000 rpm. Protein concentration was determined by the BCA protein assay (Thermo Fisher Scientific, Waltham, MA, USA), and equal amount of protein was mixed with 4× NuPAGE LDS Sample Buffer (Invitrogen, Waltham, MA, USA) and 10× NuPAGE Reducing Agent (Invitrogen). Samples were heated at 70 °C for 10 min prior to separation on NuPAGE 4–12% BisTris Mini Protein gels (Invitrogen) and NuPAGE MOPS SDS Running Buffer (Invitrogen). Proteins were subsequently transferred to polyvinylidene fluoride (PVDF) membrane via iBlot Dry Blotting System (Thermo Fisher Scientific). Membranes were incubated with the appropriate antibodies and imaged with Bio-rad ChemiDoc Imaging System using Western Lighting Plus ECL (PerkinElmer, Waltham, MA, USA). A list of the antibodies and their sources can be found in Supplementary Table S2.
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