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6 protocols using anti sod2

1

Evaluation of Oxidative Stress Pathways

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QUIN, CUR, o-ophthaldehyde (OPA), NADPH, β-nicotinamide adenine dinucleotide phosphate (NADP+), GR, GSH, oxidized glutathione (GSSG), 2,3-naphthalenedicarboxyaldehyde (NDA), H2O2, 1-choloro-2,4-dinitrobenzene (CDNB), glucose 6-phosphate, dithiothreitol, bovine serum albumin (BSA), ethylenediamine tetraacetic acid (EDTA), paraformaldehyde (PAF), phenylmethylsulfonyl fluoride (PMSF), protease and phosphatase inhibitors, and primary antibody anti-α-tubulin were obtained from Sigma-Aldrich (St. Louis, MO, USA). Phosphoric acid (H3PO4) was obtained from Golden Bell Reagent (Guadalajara, Jalisco, Mexico). Fluoro-Jade B (FJ-B) and polyvinylidene fluoride (PVDF) membrane were obtained from Millipore (Bedford, MA, USA). Primary antibodies anti-Nrf2 (C-20), anti-GR, anti-γ-GCLc, anti-CAT, anti-phospho-ERK1/2, and anti-ERK1/2 were obtained from Santa Cruz Biotechnology Inc. (Dallas, TX, USA). Primary antibodies anti-BDNF and anti-GPx were obtained from Abcam (Cambridge, MA, USA). Primary antibodies anti-SOD1 and anti-SOD2 were obtained from Enzo Life Science (Farmingdale, NY, USA). Donkey anti-rabbit, anti-mouse, and anti-goat horseradish peroxidase-conjugate antibodies (secondary antibodies) were from Jackson Immunoresearch Laboratories Inc. (West Grove, PA, USA). Deionized water from a Milli-Q system (Millipore) was used for preparation of solutions.
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2

Protein Extraction and Analysis Protocol

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Cells were rinsed in phosphate-buffered saline (PBS) on ice and lysed in RIPA (Radioimmunoprecipitation assay buffer) buffer supplemented with a protease inhibitor cocktail (Sigma-Aldrich, P8340, Milan, Italy), Na4VO3 0.1 mM (Sigma-Aldrich, S6508, Milan, Italy), NaF 1 mM (Sigma-Aldrich, S7920, Milan, Italy) and β-Glycerophosphate 5 mM (Sigma-Aldrich, G6376, Milan, Italy). Cell extracts were centrifuged at 15,000× g for 10 min at 4 °C. Protein concentrations were determined with the Bio-Rad Protein Assay Kit (Bio-Rad, 5000001, Milan, Italy). Cell extracts were separated by sodium dodecyl sulphate–polyacrylamide gel electrophoresis (SDS–PAGE). Primary antibodies used were: anti-SOD2 (Enzo-Lifesciences, Milan, Italy), anti-TOMM20 (Santa Cruz Biotechnology, Milan, Italy), anti-PRKN (Cell signalling, Milan, Italy), anti-VCL (Santa Cruz Biotechnology, Milan, Italy), anti-Ub (Santa Cruz Biotechnology, Milan, Italy), anti-Ub (KK2, Enzo-Lifesciences, Milan, Italy), anti-HSP60 (Santa Cruz Biotechnology, Milan, Italy). All uncropped images are illustrated in Supplementary Figure S1).
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3

Protein Expression Analysis by Western Blotting

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Samples of tissue or cell extract were separated by SDS–polyacrylamide gel electrophoresis, and the proteins were transferred to a polyvinylidene fluoride membrane (Immobilon-P; Millipore, Bedford, MA, USA) in a Trans-Blot SD Cell (BIO-RAD, Hercules, CA, USA). The membrane was blocked with 0.5% TSA Blocking Reagent (PerkinElmer Life Sciences, Waltham, MA, USA), incubated overnight at 4 °C with one of the primary antibodies—anti-NAMPT (1:1000,#A300-372A; Bethyl Laboratories Inc, Montgomery, TX, USA), anti-SIRT1 (# 07-131; Millipore), anti-SIRT3 (#5490; Cell Signaling Technology), anti- β-actin (#4970; Cell Signaling Technology), anti-Cox IV (#ab16056;Abcam, Cambridge, UK), anti- LaminB1 (#ab16048; Abcam), anti-α-tublin (#T9026; Sigma-Aldrich, St. Louis, MO, USA), anti-acetyllysine (#9441; Cell Signaling Technology), anti-SOD2 (#ADI-SOD-111; Enzo life Sciences, NY, USA), and anti-acetylated SOD219 (link) (#ab214675; Abcam)—and then incubated with horseradish peroxidase-conjugated secondary antibody (Jackson Immuno Research Laboratories Inc., West Grove, PA, USA) for 1 h. The signals were detected using ECL Western Blotting Detection Reagents (GE healthcare Limited, Buckinghamshire, UK). Signal intensities were quantified using the ImageJ program and normalized to β-actin.
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4

Antibody-Based Protein Analysis

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The following antibodies were used in the present study: anti-SOD2 from Enzo Life Sciences (Farmingdale, NY, USA); anti-IL-6 and anti-β-catenin from Santa Cruz Biotechnology (Santa Cruz, CA, USA); anti-Bcl-XL, anti-STAT3, anti-Src, and anti-phospho-Src from Cell Signaling Technology (Danvers, MA, USA); and anti-β-actin from Sigma-Aldrich (St. Louis, MO, USA). Recombinant human IL-6 was purchased from Millipore (Darmstadt, Germany).
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5

Western Blot Analysis of Muscle Proteins

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PKC epsilon, SOD2, Nrf-2, and Myogenin protein content was tested with a Western blot. In brief, C2C12 was lysed with a RIPA buffer and total protein was quantified with a BCA protein assay kit (Thermo Fisher Scientific, Waltham, MA, USA), according to the instruction protocol. Forty micrograms of proteins were separated on 10% SDS-polyacrylamide gel electrophoresis, transferred to a nitrocellulose membrane, and incubated with a specific primary antibody diluted in the blotting solution as recommended by the manufacturer protocol. We used anti-PKCe (Merck Millipore, Darmstadt, Germany, Cat. No.: 06-991), anti-SOD2 (Enzo Life Sciences Inc., Farmingdale, NY, USA, Cat. No.: ADI-SOD-111F), anti-Myogenin (Santa Cruz, Dallas, TE, USA, Cat. No.: sc-12732), anti-Nrf2 (clone: D179C, Cell Signaling, Danvers, MA, USA, Cat. No.: 12721), and anti-HSP70 (Sigma-Aldrich, St. Louis, MO, USA, Cat. No.: H5147) as a loading control. The nitrocellulose membranes were then washed and incubated with 1:5000 peroxidase-conjugated anti-rabbit (Thermo Fisher Scientific, Waltham, MA, USA) or 1:2000 peroxidase-conjugated anti-mouse IgG (Sigma-Aldrich, St. Louis, MO, USA). Proteins were resolved with an ECL SuperSignal West Pico Chemiluminescent Substrate Detection System (Thermo Fisher Scientific, Waltham, MA, USA) and densitometric analyses were performed using ImageJ software (by NIH).
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6

Comprehensive Immunoblotting Analysis of Cellular Pathways

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The detailed procedure has been described24 (link). The following primary antibodies were used: anti-Fxn (GeneTex, Cat.#: GTX54036), anti-Cox4 (Cell Signaling Technology, Cat.#: 48445), total OXPHOS Rodent WB Antibody Cocktail (MitoSciences, Cat.#: MS604), anti-Sod1 (Abcam, Cat.#: ab16831), anti-Sod2 (Enzo Life Sciences, Cat.#: ADI-SOD-111-D), anti-Sod3 (R&D Systems, Cat.#: AF4817), anti-Cat (Abcam, Cat.#: ab15834), anti-β-Tublin (Cell Signaling Technology, Cat.#: 2146 S), anti-Mmp9 (Proteintech, Cat.#: 10375-2-AP), anti-Col1a2 (Proteintech, Cat.#: 14695-1-AP), anti-Irp1 (Santa Cruz Biotechnology, Cat.#: sc-166022), anti-Tfrc (Abcam, Cat.#: ab84036), anti-Ft (Abcam, Cat.#: ab75973), anti-Opa1 (Novus Biological, Cat.#: NBP2-34206), anti-4-HNE (Abcam, Cat.#: ab48506) and anti-Gapdh (Cell Signaling Technology, Cat.#: 14C10). The proteins were detected and quantified using an Odyssey Infrared Imaging System (LI-COR Biosciences, Lincoln, NE).
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