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Nucleic acid stain 1

Manufactured by Roche
Sourced in Germany

Nucleic acid stain I is a fluorescent dye used to detect and quantify nucleic acids, including DNA and RNA, in various applications such as gel electrophoresis, flow cytometry, and fluorescence microscopy. It binds to nucleic acids and emits a fluorescent signal upon excitation, allowing for the visualization and analysis of these biomolecules.

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2 protocols using nucleic acid stain 1

1

Gene Expression Analysis by RT-PCR

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Total RNA was isolated from cells at indicated time points using Trizol (Omega Bio-tek, Shenzhen, China), according to the manufacturer’s instructions, and then reverse transcribed into cDNA with M-MLV Reverse Transcriptase (Promega, Fitchburg, WI, USA). The cDNA was analyzed by RT-PCR using rTaq DNA polymerase (Takara, Tokyo, Japan). Amplicons from the RT-PCR reactions were separated on a 1.5% agarose gel, which was stained with nucleic acid stain I (Roche Diagnostics, Mannheim, Germany), photographed, and analyzed using the Gene Tools Analysis Software (Syngene, Cambridge, UK). The cDNA was performed by qRT-PCR using a LightCycler 96 instrument (Roche). The qRT-PCR data were presented as normalized ratios, which were calculated using ΔΔCT method by LightCycler system and software (Roche, Basel, Switzerland). The human glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was used as an internal standard. The primer sequences are listed in Table 1.
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2

hTERT mRNA Expression in Colorectal Cancer Cells

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Total RNA was extracted from SW480, DLD-1 and HT29 cells using Trizol (Bio Basic Inc., Canada) according to the manufacturer’s instructions. First-strand cDNA synthesis was carried out with 2 µg RNA from each cell line and Moloney murine leukemia virus RT (MMLV-RT; MBI Fermentas, Amherst, NY, USA), then amplified in a 50-µl reaction mixture containing 50 mM of each of the four dNTPs, 3 U of Taq DNA polymerase (Promega), and 0.5 mM of primers (Sangon Co., Shanghai, China). The primers 5′-GCTGCTCAGGTCTTTCTTTTATG-3′ and 5′-CGACGTAGTCCATGTTCACAA-3′ were used to amplify a 252-bp region within the hTERT gene. As an internal control, expression of glyceraldehyde phosphate dehydrogenase (GAPDH) was assayed using the primers 5′-CTCAGACACCATGGGGAAGGTGA-3′ and 5′-ATGATCTTGAGGCTGTTGTCATA-3′ to amplify a 450-bp region. Amplification reactions were performed for 30 cycles of 94°C for 30 s, 56°C for 45 s and 72°C for 45 s. PCR products were separated on a 2.0% agarose gel, which was stained with nucleic acid stain I (Roche Diagnostics, Mannheim, Germany), photographed and analyzed semi-quantitatively using GeneTools Analysis Software (Syngene, Cambridge, UK). The cell line showing the highest level of hTERT mRNA was chosen for further study.
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