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Alexafluor 647

Manufactured by Integrated DNA Technologies

AlexaFluor 647 is a fluorescent dye used in various biological applications. It has an excitation maximum at 650 nm and an emission maximum at 668 nm, making it suitable for detection and labeling in techniques such as flow cytometry, immunoassays, and microscopy.

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2 protocols using alexafluor 647

1

Evaluating RNA-Nanoparticle Stability in Serum

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To evaluate
complex stability in serum by agarose gel electrophoresis, lead carriers
(4–50, 6–40, 8–40, and 10–40) were formulated
as described above with OH-RNA labeled with AlexaFluor 647 (Integrated
DNA Technologies) at an N:P ratio of 20:1. Formulated fluorescent
OH-RNA/NPs were then supplemented with 10% additional PBS or to a
final concentration of 10% fetal bovine serum (FBS; Gibco) and incubated
at 37 °C for 0, 2, or 6 h prior to analysis by agarose gel (4%)
electrophoresis (1 μg RNA per lane). For the PBS group and t = 0 time point, the NPs and the respective diluent were
warmed to 37 °C and mixed immediately before loading. The gel
was subsequently imaged on a LICOR Odyssey imaging system. To evaluate
the effect of serum incubation on complex activity, lead carriers
were formulated with 3pRNA, diluted in 80% FBS for 0, 2, 6, 12, 18,
or 24 h, and activity evaluated in A549-Dual reporter cells (Invivogen)
as described above at a concentration of 2 nM RNA. Data are plotted
as a percentage of luminescence at t = 0 h after
subtracting background signal from vehicle (PBS) treated controls.
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2

Single-Molecule Visualization of Bacterial DNA Segregation

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GTP, salts, and buffer components of analytical
grade were from Sigma. Ficoll 70 (GE Healthcare) was dialyzed prior
to its use in 20 mM Tris-HCl, pH 7.5, and the final concentration
was determined from its refractive index increment (0.141 mL/g).23 (link)Escherichia coli polar extract phospholipids (Avanti Polar Lipids) were kept in spectroscopic-grade
chloroform (Merck) at −20 °C. Fluorescently labeled DOPE
(ATTO655-DOPE) was from ATTO-Tech GmbH. Specific single-stranded SBS
oligonucleotides, unlabeled or labeled with Alexa Fluor 647 at the
5′ end when required, were from Integrated DNA Technologies.
Single-stranded oligonucleotides containing a single consensus sequence
(5′-AAGTAAGTGAGCGCTCACTTACGT-3′, bases
recognized by SlmA in bold)14 (link) were hybridized
as previously described.24 (link)
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