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4 protocols using bolt mes running buffer

1

Protein Extraction and Western Blot Analysis

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Cells were harvested and washed three times in 1X PBS and lysed in RIPA buffer (50 mM Tris-HCl pH 7.5, 150 mM NaCl, 1% Igepal, 0.5% sodium deoxycholate, 0.1% SDS, 500 μM DTT) supplemented with 1 μg/ml aprotinin, 1 μg/ml leupeptin (Sigma) and 1 μg/ml pepstatin (BMB). 50 μg of whole cell lysate were loaded in Bolt 4–12% Bis-Tris Plus gel (Invitrogen) or Novex WedgeWell 10% Tris-Glycine Gel (Invitrogen) and separated through gel electrophoresis (SDS-PAGE) in Bolt MES running buffer (Invitrogen) or Tris-Glycine-SDS buffer (Bio-Rad), respectively. Separated proteins were transferred to ImmunBlot PVDF membranes (BioRad) for antibody probing. Membranes were incubated with 10% BSA in TBST for 30 minutes at room temperature, then incubated for 2h at RT or overnight at 4°C with the suitable antibodies diluted in 5% BSA in 1X TBST, washed with TBST, and incubated with a dilution of 1:10000 of HRP-linked anti-mouse or anti-rabbit secondary antibody (Cell Signaling) for one hour at RT. Antibodies were then visualized using Clarity Western ECL substrate (Biorad) and imaged with Fujifilm LAS-3000 Imager (Fujifilm).
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2

Western Blot Analysis of Protein Extracts

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Cells were harvested and washed three times in 1× PBS and lysed in radioimmunoprecipitation assay buffer [50 mM tris-HCl (pH 7.5), 150 mM NaCl, 1% IGEPAL, 0.5% sodium deoxycholate, 0.1% SDS, and 500 mM DTT] supplemented with aprotinin (1 mg/ml), leupeptin (1 mg/ml; Sigma-Aldrich), and pepstatin (1 mg/ml; BMB). Whole-cell lysate (50 mg) was loaded in Bolt 4 to 12% Bis-Tris Plus gel (Invitrogen) or Novex WedgeWell 10% tris-glycine gel (Invitrogen) and separated through gel electrophoresis [SDS–polyacrylamide gel electrophoresis (SDS-PAGE)] in Bolt MES running buffer (Invitrogen) or tris-glycine-SDS buffer (Bio-Rad), respectively. Separated proteins were transferred to ImmunBlot polyvinylidene difluoride membranes (Bio-Rad) for antibody probing. Membranes were incubated with 10% bovine serum albumin (BSA) in tris-buffered saline containing 0.1% tween (TBST) for 30 min at room temperature, then incubated for 2 hours at room temperature (RT) or overnight at 4°C with the suitable antibodies diluted in 5% BSA in 1× TBST, washed with TBST, and incubated with a dilution of 1:10,000 of horseradish peroxidase–linked anti-mouse or anti-rabbit secondary antibody (Cell Signaling Technology) for 1 hour at RT. Antibodies were then visualized using Clarity Western ECL substrate (Bio-Rad) and imaged using Fujifilm LAS-3000 Imager (Fujifilm).
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3

SDS-PAGE Protein Separation and Silver Staining

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Eluates from an IP or inputs were prepared for SDS-PAGE as described above. The samples were boiled at 95°C for 10 minutes and then loaded onto a Bolt 4-12% Gradient Bis-Tris gel (Thermo Fisher). The proteins were separated at 140V with Bolt MES running buffer (Thermo Fisher). Following separation of the proteins, the gel was stained with the SilverQuest Silver Staining Kit (Thermo Fisher) following manufacturer’s instructions. For LC-MS/MS analysis of bands, bands were excised and processed for LC-MS/MS as described above.
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4

SDS-PAGE Protein Separation and Silver Staining

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Eluates from an IP or inputs were prepared for SDS-PAGE as described above. The samples were boiled at 95°C for 10 minutes and then loaded onto a Bolt 4-12% Gradient Bis-Tris gel (Thermo Fisher). The proteins were separated at 140V with Bolt MES running buffer (Thermo Fisher). Following separation of the proteins, the gel was stained with the SilverQuest Silver Staining Kit (Thermo Fisher) following manufacturer’s instructions. For LC-MS/MS analysis of bands, bands were excised and processed for LC-MS/MS as described above.
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