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5 protocols using ez pcr kit

1

HNSCC Cell Lines and Knockdown

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HNSCC (92-VU-040T, 93-VU-147T) cell lines were kindly provided by Prof Hans Joenje (VU University Medical Center, Amsterdam, the Netherlands), and HeLa cells were obtained from ECACC. All cells were maintained in DMEM (Sigma-Aldrich) supplemented with 10% fetal bovine serum, penicillin (105 U/l), and streptomycin (100 mg/l). Cells were cultured at low passage and authenticated by short tandem repeat analysis (NorthGene, Newcastle upon Tyne, UK) (Supplementary Fig. S1A and S1B) and tested for mycoplasma contamination (EZ-PCR kit; Geneflow). HNSCC cells stably transduced with PTTG, PBF or Scrambled (Scr) shRNA were generated using the BLOCK-iT lentiviral RNAi expression system (Invitrogen) or pre-designed, transduction-ready SMARTvector 2.0 lentiviral particles expressing specific shRNA sequences (Dharmacon) as per manufacturer’s instructions. Further information on HNSCC cells and shRNA sequences are provided (Supplementary Tables S3 and S4).
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2

Cell Culture Conditions of Prostate Lines

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PNT1A, PC3 and LNCaP cells were purchased from American Type Culture Collection (ATCC). P4E6 were derived in our laboratory51 (link) and BPH1 were a kind gift from Dr Hayward (NorthShore University HealthSystem Research Institute). PNT1A and LNCaP were cultured in Roswell Park Memorial Institute medium (RPMI-1640) (Invitrogen Ltd) supplemented with 10% Foetal Calf Serum (FCS), and 2 mM L-Glutamine (Invitrogen Ltd). BPH1 cells were cultured in RPMI-1640 supplemented with 5% FCS, and 2 mM L-Glutamine. P4E6 cells were cultured in Keratinocyte Serum-Free Medium (KSFM) (Invitrogen Ltd) supplemented with 2% FCS, 2 mM L-Glutamine, 5 ng/ml Epidermal Growth Factor (EGF), 50 μg/ml bovine pituitary extract (Invitrogen Ltd). PC3 cells were cultured in Ham’s F-12 medium (Lonza) supplemented with 7% FCS and 2 mM L-Glutamine. All cell lines were cultured at low passage and routinely tested for Mycoplasma contamination (EZ-PCR kit; Geneflow).
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Thyroid Cell Culture and Transfection

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Human thyroid samples were obtained with local ethics committee approval (Birmingham Clinical Research Office, UK) and informed patient consent. Thyroid TPC-1 cells were kindly provided by Dr Rebecca Schweppe (University of Colorado, Denver, CO, USA) and maintained in RPMI 1640 (Life Technologies, Paisley, UK) supplemented with 10% fetal bovine serum, penicillin (105 U/l), and streptomycin (100 mg/l). Cells were cultured as recommended at low passage and authenticated by short tandem repeat analysis (DNA Diagnostics Centre, London, UK) and tested for mycoplasma contamination (EZ-PCR kit; Geneflow, Lichfield, UK). pEFP BRAFV600E containing BRAFV600E cDNA was kindly provided by Jim Fagin (Memorial Sloan-Kettering Cancer Center, New York, USA). Cells were transfected using TransIT LT1 (Mirus Bio LLC, Madison, WI, USA) according to manufacturer's protocol.
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Thyroid Cell Culture and Transfection

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Human thyroid samples were obtained with local ethics committee approval (Birmingham Clinical Research Office, UK) and informed patient consent. Thyroid TPC-1 cells were kindly provided by Dr Rebecca Schweppe (University of Colorado, Denver, CO, USA) and maintained in RPMI 1640 (Life Technologies, Paisley, UK) supplemented with 10% fetal bovine serum, penicillin (105 U/l), and streptomycin (100 mg/l). Cells were cultured as recommended at low passage and authenticated by short tandem repeat analysis (DNA Diagnostics Centre, London, UK) and tested for mycoplasma contamination (EZ-PCR kit; Geneflow, Lichfield, UK). pEFP BRAFV600E containing BRAFV600E cDNA was kindly provided by Jim Fagin (Memorial Sloan-Kettering Cancer Center, New York, USA). Cells were transfected using TransIT LT1 (Mirus Bio LLC, Madison, WI, USA) according to manufacturer's protocol.
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5

Thyroid and Cervical Cancer Cell Culture

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Thyroid (TPC-1, 8505C, SW1736) cancer cell lines were maintained in RPMI-1640 (Life Technologies), while HeLa and HEK293 cancer cells were maintained in DMEM (Sigma-Aldrich). Media was supplemented with 10% fetal bovine serum (FBS), penicillin (105 U/l), and streptomycin (100 mg/l) and cell lines were maintained at 37ºC and 5% CO2 in a humidified environment. Cell lines were obtained from ECACC (HEK293, HeLa) and DSMZ (8505C), while TPC-1 and SW1736 cell lines were kindly provided by Dr Rebecca Schweppe (University of Colorado). Cells were cultured at low passage, authenticated by short tandem repeat analysis (NorthGene; Supp Fig. S1) and tested for mycoplasma contamination (EZ-PCR kit; Geneflow; latest test - 7/2023). Thawed cells were cultured for at least 2 weeks prior to use. Stable TPC-1-NIS and 8505C-NIS cells were generated by transfection of parental TPC-1 or 8505C cells with pcDNA3.1-NIS. Geneticin-resistant monoclonal colonies were expanded following FACS single cell sorting (University of Birmingham Flow Cytometry Facility), and Western blotting used to confirm NIS expression.
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