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16 protocols using spectra max 250 spectrophotometer

1

Cell Proliferation Assay Using CCK-8

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Cell proliferation was assessed using the CCK-8 assay (Beyotime Biotechnology, Nantong, China). Cells (2 × 103) were seeded into each well of 96-well plates. 10 μL of CCK-8 solution was added to each well at six time points. After 1.5 h of incubation at 37°C, the absorbance at 450 nM was measured using Spectra Max 250 spectrophotometer (Molecular Devices, Sunnyvale, CA, USA). Experiments were independently performed in triplicate.
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2

Spectrophotometric Assay of MAL(TIR) Filaments

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The MALTIR protein (∼87.5–103 µM in 100 µL of 10 mM HEPES, pH 7.5 and 150 mM NaCl) or protein with pre-mixed ligands was aliquoted into a 96-well plate. Filament formation was then monitored in a SpectraMax 250 spectrophotometer (Molecular Devices) at 30 °C by the change in turbidity at 500 nm as a function of time 18 (link). The initial screen of o-vanillin and its analogues was carried out at 1:50 molar ratio, i.e. for ∼87.5 µM MALTIR protein, 4.4 mM compounds were tested. As o-vanillin, 2-NB, and 3-QC inhibited MALTIR filament formation, these compounds were tested further in a concentration-dependent manner. For 90 µM MALTIR protein, compounds were tested at 1:5, 1:10, 1:25, 1:50 and 1:100 molar ratios that corresponds to 0.45, 0.90, 2.25, 4.5 and 9.0 mM compounds, respectively. To determine the role of reactive groups, o-vanillin, and its analogues o-vanillic acid, o-acetovanillon and 2,3-DEB were tested at 1:20 molar ratio, i.e. for ∼103 µM MALTIR protein, 2 mM compounds were tested.
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3

Cell Viability Assay with Doxorubicin and Cisplatin

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After 48h of transfection in 96-well plates, freshly prepared medium containing several final concentrations of doxorubicin (0, 2, 4, 8, 16, 32 and 64 μg/mL) or cisplatin (0, 1, 2, 4, 8, 16μg/mL) was added to the wells, with three replicate wells for each concentration. After incubating for another 48h, cell viability was measured using Cell Counting Kit-8 (CCK-8, Dojindo, Japan), according to the manufacturer's instructions. The absorbance at 450 nM was measured using Spectra Max 250 spectrophotometer (Molecular Devices, USA).
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4

PSMA-Targeted Nanoparticle Binding Assay

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The PSMA positive LMD-MDA-MB-231-PSMA and parental LMD-MDA-MB-231 cells were plated in a 96 well plate at densities of 50,000–60,000 cell per well. The next day the confluent layer of cells were first fixed with 4% para-formaldehyde and then blocked with 3% BSA. After washing with PBS, 50 μL of different MION (+/− J591) or J591 alone (in different concentrations) were added in triplicate to various wells. The plate was kept at 37º C for 45 min. Sample plates were washed three times with PBS/0.1% tween-20. Anti-human HRP conjugated Ab (1: 20,000 dilutions in PBS) was then added to all wells and kept at 37º C for 45 min. After three PBS washes, 100 μL of Pierce OPD substrate was added to each well and incubated for 20 minutes at room temperature. After 20 minutes, absorbance at 450 nm was recorded for each well in a Molecular Devices Spectramax 250 spectrophotometer.
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5

Dose-Dependent Paclitaxel Cytotoxicity Assay

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Cell survival was measured by 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) viability assays. OVCAR-8 were randomly seeded at two different densities, 104 and 105 cells per well, in 24 well plates. After 24 hr, all cells were dosed with 20 mM Paclitaxel in 16 different dilutions (Figure 1A, Table S1). 300 μl of each dilution was added to each of the 24 wells. Once all the plates were dosed they were incubated for another 72hr. The MTT assay was performed according to the manufacturer’s instructions (Molecular Probes, Eugene, OR). Absorbance values were determined at 570 nm on a Spectra Max 250 spectrophotometer (Molecular Devices, Sunnyvale, CA). All MTT assays were performed three times in triplicate.
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6

Quantifying Mixed-Biofilm Formation

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Biofilm formation was determined using the previously described method with modifications (24 (link)). Bacterial strains were inoculated into the MB medium and incubated for 24 h at 30°C. Bacterial cells were collected by centrifugation and resuspended in fresh MB medium to an OD600 of 0.2. To form a mixed-biofilm, the cell suspensions of two different strains were mixed at a 1:1 OD600 ratio. Each cell suspension was diluted to an OD600 of 0.01 in fresh MB medium. Flat-bottom 96-well polystyrene microtiter plates (Thermo Fisher Scientific Inc. IL, USA) were used to examine biofilm formation. An aliquot of 100 μL of the diluted cell suspension was added to each well. After being incubated at 30°C for 48 h, 25 μL of a 0.1% crystal violet solution was added to each well. The plates were incubated at room temperature for 15 min and rinsed twice with sterile water. Crystal violet was dissolved in 100 μL of 99.5% ethanol, and biofilm formation was analyzed at 595 nm using a Spectra Max 250 spectrophotometer (Molecular Devices, CA, USA).
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7

XTT Cell Viability Assay for Cytotoxicity

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To assess the cytotoxicity
of the compounds being studied, the XTT Cell Viability Assay kit (Biological
Industries, USA) was utilized as per the manufacturer’s guidelines.
In brief, Vero cells were treated with varying concentrations of the
conjugates under study for 3 days at 37 °C. Postincubation, the
medium was discarded, and 100 μL of new medium was added to
the cells. Subsequently, 50 μL of the activated XTT solution
(2,3-bis(2-methoxy-4-nitro-5-sulphenyl)-(2H)-tetrazolium-5-carboxanilide)
was added, followed by a further incubation for 2 h at 37 °C.
Absorbance was measured at a wavelength of 450 nm using a Spectra
MAX 250 spectrophotometer (Molecular Devices, USA). The results were
expressed as a percentage, calculated as the ratio of the signal from
the tested sample to that from the control sample (cells treated with
solvent) multiplied by 100%.
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8

Cell Viability Evaluation of Breast Cancer Cells

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Transfected MDA-MB-231 and MCF-7 cells were seeded at a density of 5 × 103 cells per well into 96-well plates and incubated at 37 °C for 24 h. Cell viability was assessed at 24, 48, 72 and 96 h using a 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay [31 (link)]. Absorbance values were determined at 570 nm (SpectraMax 250 spectrophotometer; Molecular Devices, Sunnyvale, CA, USA).
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9

Cell Viability and Colony Formation Assays

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Cell Counting Kit 8 (CCK-8; Beyotime Biotech) assays were used to measure cell viability from OD450 absorbance readings (Spectra Max 250 spectrophotometer; Molecular Devices, California, USA). After exponential phase, cells were seeded into 96-well plates, 10 μl CCK-8 reagent was added to each well at 6, 24, 48, 72, and 96 h [27 (link)]. After 1.5 h of incubation, absorbance was measured using a microplate reader. Each experiment was performed independently in triplicate.
Colony formation assays were performed to determine the colony numbers. Briefly, HCC cells were seeded into 6-well plates and maintained for 14 days. Emergent cell colonies were then fixed and incubated with 0.1% crystal violet and 20% methanol solution for 10 min. Visible colonies were photographed and counted using a microscope (Nikon, Tokyo, Japan). All experiments were performed at least thrice.
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10

Cell Proliferation Assays for 97H Cells

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The proliferation rate of cells was measured using the CCK-8 assay Kit (CCK-8, Beyotime Institute of Biotechnology, Shanghai, China). Cells were seeded into 96-well plates at the indicated density and cultured in complete medium. The absorbance was measured at 450 nM using a SpectraMax 250 spectrophotometer (Molecular Devices, USA). The EdU assay (RiboBio, Guangzhou, China) was used to determine the cell proliferation capacity. The 97H cells were seeded into 96-well plates at a density of 1×104 cells per well and cultured overnight. All operations were performed based on the kit instructions. Fluorescence microscopy was used to observe and analyze the number of EdU-positive cells.
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