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28 protocols using hoechst 33342 solution

1

Apoptosis, Necrosis, and ROS Imaging

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After HHP treatment, 1 × 105 cells per sample were washed with PBS, resuspended in fresh DMEM/ 10% FBS, and seeded in a 35-mm glass-bottom dish (Matsunami Glass Ind., Ltd., Osaka, Japan), after which they were stored for 30–60 min at 37 °C in a 5% CO2 incubator to encourage attachment to the dish bottom. For apoptosis/necrosis observation, the medium was gently discarded, and cells were washed 2 times with 200 μl of Assay Buffer. The cells attached to each glass-bottom dish were then incubated with a mixture of 200 μl Assay Buffer, 2 μl Apopxin Green Indicator, 1 μl 7-AAD and 1 μl CytoCalcein 450 (ab176749; Abcam) at RT for 30–60 min. For imaging ROS production, 1 ml of 5 μM MitoSOX reagent working solution (Molecular Probes) was administered to each glass-bottom dish, which was then incubated at 37 °C for 10 min. After gently washing 3 times with PBS, those cells were counterstained with Hoechst 33342 solution (Dojindo Molecular Technologies, Inc., Kumamoto, Japan) and incubated at RT for 15 min. Finally, images were acquired using a confocal laser scanning microscope (Fluoview FV3000; Olympus Co., Tokyo, Japan).
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2

Polyphenol Effects on Raldh2 Promoter Activity

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Effects of the polyphenols on Raldh2 promoter activity in differentiated THP-1 cells were evaluated by monitoring changes in enhanced green fluorescent protein (EGFP) fluorescence derived from THP-1 (Raldh2p–EGFP) cells using the IN Cell Analyzer 2200 (Cytiva, Tokyo, Japan). THP-1 (Raldh2p–EGFP) cells were seeded in 96-well blackplates (Greiner Bio-one, Tokyo, Japan) at a density of 6 × 105 cells/mL, treated with 100 ng/mL phorbol 12-myristate 13-acetate (PMA), and cultured for 48 h. After culturing, polyphenols were directly added to the cells at the final concentration of 10 μM and cells were further cultured for 24 h. Cells were then fixed with 4% formaldehyde for 15 min at room temperature. After washing the cells with phosphate-buffered saline (PBS), the cells were stained with 1 μg/mL Hoechst 33,342 solution (Dojindo, Kumamoto, Japan) for 20 min. The relative EGFP fluorescence intensity per cell was measured using IN Cell Analyzer 2200.
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3

Immunostaining of Parasite Thin Blood Smears

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Thin blood smears from cultured parasites were prepared and fixed as previously described (29 (link)). Blocking was done with 10% normal goat serum (Invitrogen)–PBS at 37°C for 30 min. To confirm the expression of Cas9, blood smears were immunostained with mouse anti-FLAG monoclonal antibody (M20008; Abmart, Shanghai, China) at 1:100 dilutions in PBS with 0.05% Tween 20 (T-PBS) and incubated at 37°C for 60 min. To evaluate myc epitope tagging of SBP3, the slides were immunostained with mouse anti-myc monoclonal antibody (9B11; Cell Signaling Technology, Danvers, MA, USA) at a 1:500 dilution. After 3 washes with T-PBS, the blood smears were incubated with Alexa Fluor 488-conjugated secondary goat anti-mouse IgG antibody (Invitrogen) (1:500 dilutions) at 37°C for 30 min. The smears were washed again 3 times with T-PBS and incubated with 1 μg/ml of Hoechst 33342 solution (Dojindo, Kumamoto, Japan) at 37°C for 20 min. After 3 washes with T-PBS, the smears were examined under a Nikon A1R confocal laser scanning microscope (Nikon, Tokyo, Japan).
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4

ROS Quantification in H2O2-Treated Cells

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Cells were seeded in triplicate in 24-well plates and pretreated with HPE for seven days. The cells were then treated with 50 μM H2O2 for 2 h, followed by the addition of CM-H2DCFDA (Invitrogen, MA, USA), as a general oxidative stress indicator. The cells were stained with Hoechst 33,342 solution (DOJINDO, Tokyo, Japan). After 60 min of treatment with the ROS indicator, images were captured using an all-in-one microscope (BZ-X700, KEYENCE, Osaka, Japan) and analyzed using a BZ-X Analyzer and BZ-X Image Converter (KEYENCE, Osaka, Japan). ROS levels were normalized using Hoechst 33,342 staining.
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5

Molecular Mechanisms of Immune Cell Apoptosis

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RPMI-1640 medium was purchased from Thermo Fisher (Shanghai, China). CCK-8 and Hoechst 33342 solution were obtained from Dojindo Laboratories (Tokyo, Japan). LPS, LY294002, and LiCl were obtained from Sigma-Aldrich (St. Louis, MO, USA). Annexin V-FITC/Propidium Iodide were obtained from Biouniquer Technology Co., Ltd. Antibodies of AKT, phospho-AKT, GSK-3β, P-GSK-3β, Bax, Bcl-2, and active caspase-3 were obtained from Cell Signaling Technology (Beverly, MA, USA). CLI-095 was obtained from Invivogen Biotechnology (San Diego, CA, USA). RNAiso Plus, SYBR Green Premix Ex Taq II, and PrimeScript RT Reagent Kit (Perfect Real Time) were purchased from TaKaRa (Takara Bio Inc., Shiga, Japan). PCR primers were synthesized at RQ Biotech (Shanghai, China).
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6

Subcellular Marker Antibodies in Cell Analysis

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Primary antibodies used in this study include the following: rabbit polyclonal anti-tricellulin (c-term), mouse monoclonal anti-occludin (Zymed Laboratories, San Francisco, CA); rabbit polyclonal anti-actin (Sigma-Aldrich, St Louis, MO); goat polyclonal anti-LDH (as a marker enzyme of cytosolic fraction), mouse monoclonal anti-calnexin (as a marker of the membrane fraction) (Abcam, Cambridge, MA); mouse monoclonal anti-PAPR-1 (as a marker of the nuclear fraction) (Calbiochem). Twelve-nm colloidal gold-conjugated anti-rabbit IgG was purchased from Jackson Immuno Research Laboratories (Western Grove, PA). The secondary antibodies used were horseradish peroxidase (HRP)-conjugated anti-rabbit or anti-mouse immunoglobulin (Ig)G (Dako ChemMate, Glostrup, Denmark), Alexia Flour 488 (green)-labeled anti-rabbit or anti-mouse IgG (Invitrogen, Carlsbad, CA), and Alexa Flour 594 (red)-labeled anti-rabbit or anti-mouse IgG (Invitrogen). DAPI was obtained from Sigma-Aldrich and Hoechst 33342 solution was obtained from Dojindo (Kumamoto, Japan).
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7

Analyzing Cell Cycle Phases with Hoechst 33342

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Hoechst 33342 solution (56 μl of 1 mg/ml stock) (DOJINDO, Kumamoto, Japan) was added to a 10-cm dish containing HeLa/Fucci cells. After incubation for 30 min, cells were harvested and analyzed using a FACSAria II (BD Bioscience, San Jose, CA). h2-3 was excited by a 488-nm laser line (laser diode) and its emission was collected through 530/30BP; AzaleaB5 was excited by a 561-nm laser line and its emission was collected through 610/20 BP. Hoechst 33342 was excited by a UV Laser at 355 nm, and its emission was collected through 450/50 BP. The data were analyzed using FlowJo software (Tree Star). See Table II for details.
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8

Cellular Uptake of mRNA Micelles by CLSM

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The cellular uptake of the micelles was measured by CLSM. CT26 cells (10,000 cells/well) were seeded on an 8-well chambered borosilicate cover glass (Lab Tek) and incubated in RPMI containing 10% FBS and 1% penicillin/streptomycin under 5% CO2 at 37 °C. After 24 h, Cy5-labeled gluc mRNA and mRNA-encapsulating micelles (700 ng mRNA per well, relative fluorescence intensity: 400 [RFU]) were applied to CT26 cells. After another 6 h, cells were washed with PBS three times, and the cell nucleus was stained with 1% Hoechst 33342 solution (Dojindo Laboratories, Kumamoto, Japan) for 5 min before LSM imaging.
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9

Cell Viability Quantification Protocol

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All cells were stained with Hoechst 33342 solution (Dojindo, Japan), while dead cells were stained with 7-AAD viability staining solution (BioLegend, US). A flow cytometer (FACSVerse, BD Biosciences, US) was used to quantify the number of cells after staining. The dead cell ratio was evaluated by means of the ratio of 7-AAD stained cell number to the total cell number. The cell viability was then obtained by subtracting the dead cell ratio from 1.
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10

Isolation and Characterization of Murine Mesenchymal Stem Cells

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FNDs were purchased from Adámas Nanotechnologies (Raleigh, VA, USA). Dulbecco's modified Eagle's medium (DMEM)/F12 and Hank's balanced salt solution were purchased from Thermo Fisher Scientific K.K. (Tokyo, Japan). Fetal bovine serum (FBS) was purchased from Trace Scientific Ltd. (Melbourne, Australia). Collagenase Type I was purchased from Koken Co., Ltd. (Tokyo, Japan). A cell counting kit-8 (CCK-8) and Hoechst33342 solution were purchased from DOJINDO Laboratories (Kumamoto, Japan). ELISA kits for mouse HGF, TGF-β1, VEGF and EGF were purchased from R&D systems, Inc. (Minneapolis, USA). Adipo-Inducer Reagent and Osteoblast-Inducer Reagent were purchased from Takara Bio. Inc. (Shiga, Japan). Phycoerythrin (PE)-conjugated anti-mouse CD29 and CD105, lymphocyte antigen 6A/E (Ly-6A/E; also known as stem cell antigen-1 or Sca-1) antibodies, fluorescein isothiocyanate (FITC)-conjugated anti-mouse CD45, CD90, and CD117 antibodies, and allophycocyanin (APC)-conjugated anti-mouse CD44 antibodies were purchased from BD Biosciences (Tokyo, Japan).
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