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70 protocols using bptes

1

Metabolic Targeting Compounds Evaluation

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The synthetic glucose analog 2DG, the inhibitor of LDH Oxamate, the glutaminolysis inhibitor BPTES, pyruvate, α-KG, the allosteric inhibitor of acetyl Co-A carboxylase TOFA, the synthetic FAS inhibitor C75, and Palmitic acid (PAL) were purchased from Sigma Aldrich (Sigma Aldrich, St. Louis, MO). Given that TOFA, C75, PAL, BPTES were dissolved in dimethyl sulfoxide (DMSO, Sigma Aldrich), cells treated with DMSO at the same volumes were used as chemical control for these treatments.
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2

Metabolic Modulation via Bioactive Compounds

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Dimethyl-α-ketoglutarate (α-KG), (–)-Epigallocatechinmo nogallate (EGCG), oxaloacetic acid (OAA), pyruvate, Adenosine 5ʹ-triphosphate (ATP), citric acid-anhydrous, glutathione reduced ethyl ester (GSHe), and D-(+)-glucose were purchased from Sigma-Aldrich (USA). L-Buthionine sulfoximine (BSO) was purchased from Santa Cruz Biotechnology (USA). All of above chemicals were diluted with culture medium to the indicated final concentrations just before use. Bis-2-(5-phenylacetamido-1,3,4- thiadiazol-2-yl) ethyl sulfide (BPTES) (Sigma, USA) was solubilized in dimethyl sulfoxide (DMSO) to a stock concentration of 10 mM. Additional dilutions of BPTES were made in methanol and used at the indicated final concentrations.
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3

Metabolic Regulation of Activated CD8+ T Cells

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Activated PMEL CD8+ T cells in resting phase (day 7 in culture) as described above were restimulated with dimerized anti-CD3 antibody in complete RPMI medium containing IL-2 (10 ng/mL) and indicated inhibitors [2-DG, 0.5 mM; Oligomycin, 1 μM; Etomoxir (ETO Sigma-Aldrich), 200 μM; Bis-2-(5-phenylacetamido-1,3,4-thiadiazol-2-yl)ethyl sulfide (BPTES, Sigma-Aldrich), 20 μM; or UK5099 (Sigma-Aldrich), 100 μM] for 2 days in the presence or absence of IL-10/Fc (200 ng/mL). Live CD8+ T cell counts were determined by flow cytometry analyses. Pan CD8+ T cells or sorted subsets of CD8+ T cells were prepared for Seahorse assay as described above.
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4

Cell Culture Conditions for p53 Studies

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MEF WT p53+/+, MEF p53−/−, SaOs2-tetracycline inducible p53, E1A-RAS transformed MEFs, HT1080, EB3, 293T, CA46, SupT1, MiaPaca2, and 249P cells were initially cultured in Dulbecco’s modified Eagle’s medium (DMEM, Corning, New York, NY, USA) which contained 25 mM glucose and 4 mM L-glutamine. DMEM was supplemented with 10% dialyzed fetal bovine serum (dFBS, Gemini Bio-Products, Sacramento, CA, USA) and 100 units/mL penicillin and 100 μg/mL streptomycin (P/S, Genesee Scientific). All cells were cultured at 37° C with 5% CO2. SaOs2 cells engineered to induce WT p53 upon tetracycline were generously provided by Karen Vousden (Francis Crick Institute, London, England) (Bensaad et al., 2006 (link)). Doxycycline (1 μg/mL) was added to DMEM 24 hours prior to glutamine deprivation studies to ensure p53 expression. BPTES (used at 10 μM) and camptothecin (CPT, used at 2 μM) was purchased from Sigma-Aldrich (St Louis, MO, USA). Doxorubicin was purchased from Selleckchem (Houston, TX, USA). Cell viability and proliferation was measured by exclusion of Trypan blue dye (Sigma) and determined by cell counting.
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5

Cell Culture and Metabolic Modulation

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MCF-7, Madin Darby Canine Kidney (MDCK), and L cells from the American Type Culture Collection (ATCC) were cultured under established conditions [29 (link)]. Wnt3a-secreting L cells and HCT116 cells were provided by Dr. Min DS and Dr. Kim YJ (Pusan National University, Pusan, Korea), respectively. The Gln deprivation experiment was performed by applying EMEM without Gln (GIBCO, Carlsbad, CA, USA). Recombinant TGF-β (R&D Systems, MN, USA) was applied to cells at a concentration of 10 ng/ml. 40 μM DON (Sigma, St. Louis, MO, USA), 5 μM 968 (Calbiochem, San Diego, CA, USA), 10 μM BPTES (Sigma), or 1 mM dimethyl-α-ketoglutarate (α-KG; Sigma) were also applied to cells.
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6

Cell Viability Assay Reagents

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Cycloheximide (Sigma, 01810-G), MG132 (Selleck, 50-833-9), DMOG (Frontier Scientific, D1070), BPTES (Sigma, SML0601), EGCG (Sigma, 03970590-10MG), AOA (Sigma, C13408-1G), L-Glutamic acid (Sigma, RES5063G-A701X), AZD6244 (Selleck Chem, S1008) were obtained from standard vendors. Universally labeled L-Glutamine (U-13C5) (Cambridge Isotope Laboratories, CLM-1822-H-0.1) and D-Glucose (U-13C6) (Cambridge Isotope Laboratories, CLM1396-1) were obtained from Cambridge Isotope Laboratories. Cell Titer-Glo Luminescent Cell viability assay (Catalog No. G7572) was purchased from Promega Corporation (Madison, WI).
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7

Antibody Characterization and Inhibitor Preparation

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PARP antibody was purchased from Cell Signaling Technology, Inc. (Beverly, MA, USA), goat anti-mouse and goat anti-rabbit HRP-conjugated IgG from Bio-Rad (Hercules, CA), anti-nuclear factor erythroid related factor 2 (NRF2) antibody from Abcam (Cambridge, MA) and ECL Plus solution from Thermo-Fisher Scientific (Waltham MA, USA). CB-839 was supplied by Calithera, Inc. (South San Francisco, CA) and was dissolved either in DMSO for in vitro experiments (10 mM stock, stored at -20 0C) or in vehicle for in vivo experiments. The in vivo vehicle consisted of 25% (w/v) hydroxypropyl-β-cyclodextrin in 10 mmol/L citrate (pH 2). The GLS inhibitor BPTES (bis-2-(5-phenylacetamido-1,2,4-thiadiazol-2-yl)ethyl sulfide) and all other reagents were purchased from Sigma (St. Louis, MO)
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8

Cell Culture and Metabolic Inhibitors

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HUH7 were obtained from JCRB, BxPC3 and Panc03.27 were obtained from ATCC. STR profiling and routine testing for mycoplasma contamination were performed. HUH7 were grown in DMEM, 10% FCS, BxPC3 were grown in RPMI-1640, 10% FCS and Panc03.27 were grown in RPMI-1640, 15% FCS, 10 Units/ml human recombinant insulin (PAN-Biotech GmbH, Aidenbach, Germany & Sigma-Aldrich). All cells were cultured under constant humidity at 37 °C, 5% CO2. For HUH7, all plastic ware was pre-coated with 0.001% collagen G (PBS). Archazolid A was provided by Rolf Müller, Torin1, CCCP, BPTES, UK5099 and Etomoxir were purchased from Sigma-Aldrich, and dissolved in DMSO (Sigma-Aldrich).
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9

Metabolic Inhibitors in Cell Culture

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L-methionine sulfoximine (MSO; Sigma M5379) at 100 μM for cultured cells or tissues and 10 mg/kg for mouse experiments, L-asparaginase (ASNase) at 0.5 IU/ml for cultured cells and 3 IU/g for mouse experiments, 6-Diazo-5-oxo-L-norleucine (L-DON; Sigma D2141) at 25 μM, BPTES (Sigma SML0601) at 10 μM, aminooxyacetic acid (AOA, Sigma C13408) at 500 μM, epigallocatechin gallate (EGCG, kindly provided by Dr. Yukihiko Hara at Tea Solutions, Hara Office Inc) at 50 μM, μ-chloro-L-alanine (Santa Cruz Biotechnology sc-291972) at 250 μM, cycloserine (Sigma C1159) at 250 μM, Direct Red 80 (Sigma 365548), Picric acid (Sigma 197378), OSMI-1 (Sigma #SML1621) at 50 μM. Stable isotope tracers were purchased from Cambridge Isotope Laboratories (15N-NH4Cl, NLM-467-PK; 13C5-aKG, CLM-2411-PK).
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10

Monocyte Training and Restimulation Assay

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100 μL cells were added to flat bottom 96-well plates. After washing with warm PBS, monocytes were incubated with culture medium only as a negative control or 5 μg/mL of β-glucan, (β-1,3-(D)-glucan, kindly provided by Professor David Williams), 100 μM mono methyl-fumarate, or dimethyl-2-oxoglutarate (Sigma) for 24 hr (in 10% pooled human serum). Cells were washed once with 200 μL warm PBS and incubated for 5 days in culture medium with 10% serum and medium was changed once. Cells were restimulated with 200 μL RPMI, Escherichia coli LPS (serotype 055:B5, Sigma-Aldrich, 10 ng/mL), or Pam3Cys (EMC Microcollections, L2000, 10 μg/mL). After 24 hr, supernatants were collected and stored at −20°C (see Figure S1). In some experiments, cells were preincubated (before β-glucan training) for 1 hr with 10 nM rapamycin (Sigma), 50 μM BPTES (Sigma), 2 μg/mL Ceruline (Sigma), 100 μM 6-aminonicotinamide (Sigma), and 20 μM fluvastatin sodium hydrate (Sigma). Concentrations were selected as being the highest non-cytotoxic concentrations.
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