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20 protocols using anti cd31

1

Immunohistochemical and Immunofluorescence Analysis of Liver Tissue

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For IHC, the liver tissues were fixed in 4% paraformaldehyde, embedded in paraffin, and sectioned (4-μm thickness). They were then dewaxed, hydrated for 30 min at room temperature, and incubated overnight at 4 °C with the following primary antibodies: anti-CD31 (1:1000, Proteintech, Wuhan, China); anti-CD206 (1:10000, Proteintech, Wuhan, China), anti-HECTD3 (1:400, BIOS, Beijing, China). Subsequently, the slides were incubated with a horseradish peroxidase-labeled secondary antibody, and the immunoreactivity was visualized with 3,3-diaminobenzidine tetrahydrochloride (DAB). Tissue sections were counterstained with hematoxylin and visualized using Leica Microsystems at 200 × and 400 × magnification. Image-pro plus 6.0 was used for image analysis (Media CybernetiHOPE, Inc., Rockville, MD, USA).
IF was performed as previously reported44 (link). Specifically, the sections or cell slides were incubated with anti-CD31, anti-CD206, anti-TRAF3 (1:100, Proteintech, Wuhan, China), anti-Ly6G (1:100, Novus, Littleton, USA), anti-MPO (1:200, Servicebio, Wuhan, China), anti-CD11b (1:500, Servicebio, Wuhan, China) and anti-HECTD3 (1:100, BIOS, Beijing, China) antibodies. After washing, the slides were incubated with Alexa Fluor 594-conjugated secondary antibodies or Alexa Fluor 488-conjugated secondary antibodies (1:200, Proteintech, Wuhan, China).
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2

Immunohistochemical analysis of penile tissue

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Penises were fixed with 4% formaldehyde supplemented with 0.002% picric acid for 4 hours at room temperature and were then dehydrated in 30% sucrose PBS overnight at 4 °C. Fixed tissues were embedded in optimal cutting temperature (OCT) compound (Leica) and cut into 10-μm sections. Sections were blocked with 0.1% Triton X-100/0.1% Tween 20/3% nonimmune goat serum in PBS for 1 hour at room temperature Sections were incubated with primary antibodies (anti-MYPT1 (1:200, Cat. No. 22117-1-AP, Proteintech); anti-smooth muscle α-actin (1:200, Cat. No. ab7817, Abcam); anti-eNOS (1:200, Cat. BS3571, BioRad); antidesmin (1:200, Cat. No. 21404-1-AP, Proteintech); anti-SMHHC (1:200, Cat. No. 16520-1-AP, Proteintech), anti-CD31 (1:200, Cat.No.550274, BD Biosciences) overnight at 4 °C and then with fluorescent secondary antibodies (Invitrogen) for 2 hours at room temperature. Fluorescence staining was examined under a confocal microscope (Olympus).
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3

Immunohistochemical Analysis of Tissue Markers

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The animal tissues were embedded in paraffin and then processed for IHC. The paraffin sections were incubated with anti-SET8 (ProteinTech, Wuhan, China), anti-FOXO1 (Cell Signaling Technology, Danvers, MA), anti-PTEN (Proteintech, Wuhan, China), and anti-CD31 (Proteintech, Wuhan, China) antibodies overnight at 4 °C in a humidified chamber. Double staining was performed with the use of diaminobenzidine and fast red as the enzyme substrates according to the manufacturer’s instructions.
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4

Immunofluorescence Staining of Cultured Tissue

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After 7 days of culture, the device was disassembled, and the cultured tissue was fixed in 4% paraformaldehyde for 30 min at room temperature and then permeabilized with 0.2% Triton X-100 (Sigma) in PBS solution for 15 min at room temperature. After blocking with 2% bovine serum albumin (BSA, Sigma) in PBS for 1 h at room temperature, samples were incubated overnight at 4 °C with primary antibodies (anti-CD31, anti-ZO-1, anti-CYP1A2, and anti-CYP3A4; 1:100 in PBS; Proteintech Co., Ltd., Hubei, China) and then incubated for 4 h at 4 °C with the corresponding secondary antibodies (Alexa Fluor 488 or 594; 1:250 in PBS; ABclonal Biotech Co., Ltd., Hubei, China). Cell nuclei were stained with 4’,6-diamidino-2-phenylindole (DAPI; 1:100 in PBS; Proteintech Co., Ltd., Hubei, China) for 30 min at room temperature. The samples were washed 3 times with PBS after each step (Fig. S14B and Fig. S14C). Images of the samples were taken using CLSM.
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5

Flow Cytometry Analysis of TDSCs

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Flow cytometry assay of TDSCs was carried out as described previously [30 (link),31 (link)]. TDSCs (1 × 106) were incubated with 1 µg of AF647-, PE-, PE-Cy7-, or FITC-conjugated specific mouse to rat monoclonal antibodies for 20 min at 4 °C. PE- or FITC-conjugated isotype-matched IgGs (#65209, Abclonal, Wuhan, China) were used as controls. After rinsing with PBS at 300 g for 5 min, the stained cells were resuspended in 400 μL of PBS with 10% FBS (#2128194, XP Biomed Ltd., Shanghai,, China) and analyzed by flow cytometry (Beckman Cytoflex, Beckman Coulter, Brea, CA, USA). Approximately 105 events were counted per sample. The FACSCAN program (Beckman Cytoflex) was used to calculate the percentage of positive signaling cells. The antibodies, including anti-CD29 (#562153, Becton Dickinson, Franklin Lakes, NJ, USA), anti-CD44 (#550974, Becton Dickinson, Franklin Lakes, NJ, USA), anti-CD90 (#551401, Becton Dickinson, Franklin Lakes, NJ, USA), anti-CD34 (sc-7324, Santa Cruz Biotechology, Dallas, TX, USA), and anti-CD31 (FITC-65058, Proteintech, Wuhan, China), were used in this study.
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6

Protein Expression Analysis in Tissue Samples

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IHC was used to measure protein expression of the specimens of participants and animals with the specific primary antibody at 4℃ overnight in a humidified chamber. The primary antibody included anti-KMT5A (ProteinTech, Wuhan, China), anti-ENO1 (Proteintech, Wuhan, China), anti-regulatory factor X1 (RFX1, Santa Cruz Biotechnology, Santa Cruz, CA), anti-vimentin (Proteintech, Wuhan, China), anti-CD31 (Proteintech, Wuhan, China) and anti-αSMA (Cell Signaling Technology, Danvers, MA) antibodies.
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7

Histological Evaluation of Liver Damage

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The paraformaldehyde-fixed livers were dehydrated, embedded in paraffin, and cut into 5- to 7-μm-thick sections before being subjected to H&E staining as described previously.12 (link) The severity level of liver damage was assessed for inflammatory infiltration, cell swelling, and tissue architecture disruption in a blinded fashion and scored on a 4-point scale (0, none; 1, slight; 2, moderate; 3, severe).
For immunofluorescence assays, the liver sections were incubated with anti-CD31 (1:3,000, Proteintech, IL, USA), anti-Glut1 (1:100, Proteintech), anti-Sele (1:2,000, Proteintech), anti-Ly6G (1:3,000, Servicebio, Wuhan, China), anti-Lta4h (1:1,000, Proteintech), anti-Sort1 (1:400, Proteintech), anti-ATF4 (1:1,000, ABclonal, Wuhan, China), anti-Fosl1 (1:1,000, ABclonal), anti–NF–κB1(1:1,000, ABclonal), and anti-F4/80 (1:500, Servicebio) primary antibodies, followed by washing and incubation with the fluorophore-labelled secondary antibody, and visualisation using a confocal microscope (Nikon, Tokyo, Japan).
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8

Immunofluorescence Staining of Penile and MPG Tissues

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Slices of penile and MPG tissues were processed for immunofluorescence staining. Briefly, after the fixation with 2% formaldehyde and permeabilization with 0.5% TritonX-100, slices were incubated with primary antibodies (anti-α-SMA, anti-nNOs, anti-CD31, anti-Sca-1, and anti-CD44, ProteinTech Group, Inc) at 4 °C overnight and then incubated with CoraLite 488/594-conjugated Goat Anti-Rabbit IgG (ProteinTech Group, Inc) respectively at room temperature for 2 h in dark. Tissues were visualized under a confocal microscope (Olympus GmbH, Hamburg, Germany).
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9

Fluorescent Tissue Imaging Protocol

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Tissue slices were individually stained with primary antibodies (anti‐Col‐I, anti‐CD31, anti‐iNOS, anti‐TGF‐β1, anti‐MMP‐8, and anti‐MMP‐9, all obtained from Proteintech, Wuhan, China). After thorough rinsing, the slices were treated with secondary antibodies labeled with FITC (green fluorescence) or TRITC (red fluorescence) for color visualization. The nuclei were stained with a 4′,6‐diamidino‐2‐phenylindole (DAPI) containing mounting solution. Slides were then observed under an inverted fluorescence microscope (IX53, Olympus).
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10

Immunohistochemical Analysis of RCC Biomarkers

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Immunohistochemistry was performed on human RCC tissues and xenografted tumor tissues with anti-MIIP (1:100), anti-CYR61 (1:200), anti-HIF-2α (1:200), or anti-Ki67 (1:200, Proteintech) primary antibodies. Immunofluorescence staining was performed on xenografted tumor tissues with anti-CD31 (1:200, Proteintech) primary antibodies. The staining score was calculated by multiplying the stained area (%) score and the intensity score. The stained area (%) score was based on the percentage of cells with positive staining (<5%: 0; 5%–25%: 1; 26%–50%: 2; 51%–75%: 3; and >75%: 4), and the intensity score was based on the cell staining intensity (no staining: 0; weak: 1; moderate: 2; and strong: 3). High expression was specified by a score ≥9, whereas low expression corresponded to a score <9. All scoring work was performed independently by 2 pathologists.
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