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11 protocols using horseradish peroxidase conjugated goat anti rabbit

1

Western Blot Analysis of Brain Proteins

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Brain samples were homogenized and sonicated in lysis buffer. Total protein was measured by a NanoDrop apparatus (MaestroGen, Las Vegas, NV, USA). 20 μg protein were size-fractionated using any-kD Mini-Protean TGX gel electrophoresis and then transferred to a nitrocellulose membrane, and membranes were blocked and washed in TBS-T, and incubated overnight with AC, ACC1, ACC2, PC, PCC, MCC, presynaptic synapsin I, postsynaptic PSD95, PSD93, IL-17, IL-6, TNF-α, NFkB, GFAP, GAP43, ICAM-1, BDNF, CXCL 16, OPG and MMP-9 antibodies (Abcam, Cambridge, UK). The following day, membranes were washed and then incubated with horseradish peroxidase-conjugated goat anti-rabbit (Abcam, Cambridge, UK) or goat anti-mouse (Abcam, Cambridge, UK) secondary antibody (diluted 1:1000) for 1 h at room temperature. Protein loading was controlled with an anti-β-actin antibody (Abcam, Cambridge, UK). Protein levels were analyzed densitometrically using an image analysis system (Image J; National Institute of Health, Bethesda, MD, USA), corrected with values determined on β-actin blots, and expressed as relative values compared with the control group.
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2

Quantification of Amygdalar Proteins in Rats

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The amygdala samples were harvested 24 h after final behavioral test. The amygdala of rats was ultrasonically disrupted in a cold radio immunoprecipitation assay (RIPA) lysis buffer (Beyotime Biotechnology Co., Haimen, Jiangsu, China) with protease inhibitors (PMSF, Beyotime Biotechnology Co., Haimen, Jiangsu, China) followed by centrifugation at 12,000 × g for 20 min. Then, the total protein concentration of the supernatant was quantified by a BCA kit (Beyotime Biotechnology Co., Haimen, Jiangsu, China). Western blotting was performed as described previously (Hiroi et al., 1997 (link)). Primary antibodies used were tyrosine hydroxylase (TH, rabbit polyclonal, 1:2,500; Proteintech, Chicago, IL, United States); glial fibrillary acid protein (GFAP, rabbit polyclonal, 1:3,000; Abcam, MA, United States); Iba1 (rabbit monoclonal, 1:1,000; Abcam); DRD1 (rabbit monoclonal, 1:2,000; Abcam); DRD2 (rabbit polyclonal, 1:1,000; Abcam, MA, United States); and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (rabbit monoclonal, 1:5,000; Abcam, MA, United States). Secondary antibodies were horseradish peroxidase-conjugated goat anti-rabbit (1:5,000; Abcam, MA, United States) and horseradish peroxidase-conjugated goat anti-mouse (1:5,000; Abcam, MA, United States).
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3

Western Blot Analysis of EP1-4 Receptors in PMN- and M-MDSCs

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Proteins from isolated PMN- and M-MDSCs were extracted. In short, cells were lysed with NP-40 lysis buffer (150 mM NaCl, 1.0% NP-40, 50 mM Trist-HCl, protease inhibitors (Carl Roth)) for 30 minutes during continuous agitation and spun down at 16000 g for 20 minutes, after which the supernatant was collected. The cell lysates were separated by 10% SDS-PAGE gels in Laemmli loading buffer, and transferred to polyvinylidene fluoride (PVDF) membranes (Invitrogen, Carlsbad, CA, USA). After blocking with 5% skim milk/PBS/0.1% Tween (Carl Roth), blots were probed with primary antibodies for the EP1-4 receptors (Alomone Labs, Jerusalem, Israel, 1:250) and GAPDH (Abcam, Cambridge, UK, 1:2500). Membranes were then incubated with the appropriate secondary horseradish peroxidase-conjugated goat anti-rabbit (Abcam, 1:1000) for 1 hour at room temperature.
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4

Immunohistochemical Analysis of TIA1 Expression

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Following peroxidase blocking for 30 min and 5% bovine serum albumin (BSA; Sigma-Aldrich; Merck KGaA) blocking for 2 h at room temperature, frozen sections (20 µm) of the brain were incubated with primary antibody (cat. no. ab140595; rabbit anti-TIA1 antibody 1:1,000; Abcam, Cambridge, MA, USA) overnight. Then these sections were incubated with secondary antibody (cat. no. ab6721; horseradish peroxidase-conjugated goat anti-rabbit; 1:5,000; Abcam) for 2 h at room temperature. The expression of TIA1 was detected using a Streptavidin Peroxidase Immunohistochemical staining kit (Tiangen Biotech Co., Ltd., Beijing, China) with DAB staining. The ratio of positive cells was calculated using Image Pro Plus software (version 6.0; Media Cybernetics, Inc.). The histopathological observations were documented by light microscopy (Leica DMI400; Leica Microsystems) at 400× magnification and images were captured. Each experiment was replicated 3 times and the data are presented as the mean ± SEM.
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5

Western Blot Immunodetection of PKN1

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The purified
recombinant PKN1
proteins were separated by 10–14% SDS-PAGE and then transferred
to nitrocellulose membranes for immunostaining. The membrane was probed
with either polyclonal anti-PKN1-(539–556) or rabbit monoclonal
anti-PKN1 (Abcam) antibodies at room temperature, before being washed
with 1 × Tris buffer saline-Tween-20 (1× TBS-T) wash buffer,
followed by addition of secondary antibody (horseradish peroxidase-conjugated
goat antirabbit; Silenus or Abcam). The immunoreactive bands were
detected by enhanced chemiluminescence (ECL) (Bio-Rad Western ECL
substrate or Kodak BioMax).
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6

Quantitative Western Blot Analysis

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Protein samples were quantified using a Pierce BCA Protein Assay Kit (Thermo Fisher Scientific, Inc., Waltham, MA, USA), according to the manufacturer’s protocols. Protein samples were heated with SDS sample buffer (0.25 M Tris–HCl, pH 6.8, 0.5 M DTT, 10% SDS, 50% glycerol and 0.5% bromophenol blue) at 95 °C for 5 min, a total of 30 μg were loaded per lane and then separated on 15% SDS-PAGE and electroblotted onto polyvinylidene fluoride membranes (GE10600023, GE Healthcare Life Sciences, Logan, UT, USA). Subsequently, the membranes were incubated with one of the primary rabbit polyclonal antibodies at a dilution of 1:1,000 (Abcam) or anti-β-actin rabbit monoclonal antibody at a dilution of 1:5,000 (Abcam) overnight at 4 ℃. Immunoreactive bands were detected by incubation with horseradish peroxidase-conjugated goat anti-rabbit (Abcam) at a dilution of 1:5,000 for 2 h at room temperature. Detection by chemiluminescence was performed using a Pierce enhanced chemiluminescence kit (Thermo Fisher Scientific, Inc., Waltham, MA, USA).
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7

Visualizing Pancreatic Islet Vasculature

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Integrity of pancreatic islet blood vessels was analyzed by light microscopy upon staining with antibodies to platelet endothelial cell adhesion molecule 1 (PECAM1/CD31) and pericyte marker, PDGFRβ. Briefly, pancreatic sections were stained with primary rabbit anti-CD31 (1:50; Abcam) or rat anti-PDGFRβ (1:100; Thermo Fisher) antibodies at 4°C overnight, followed by incubation with horseradish peroxidase-conjugated goat anti-rabbit (1:2000; Abcam), or goat anti-rat (1:5000; Thermo Fisher) antibodies respectively, for 30 mins at room temperature. The sections were then incubated with the IHCWORLD substrate and 3-amino-9-ethylcarbazole (AEC) chromogen. Cell nuclei were counterstained with hematoxylin. The images were visualized and captured with a Leica DM5500 B microscope.
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8

Protein Expression Analysis by Western Blot

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Following transfection, the cells were washed three times with PBS and lysed with radioimmunoprecipitation assay lysis buffer to obtain the total protein. Protein concentration was measured using a bicinchoninic acid protein assay kit (Pierce; Thermo Fisher Scientific, Inc.). Total proteins (50 µg) were separated by 10% SDS-PAGE and then transferred onto polyvinylidene fluoride membranes, as previously described (20 (link)). The membranes were incubated with blocking buffer (5% skimmed milk) for 1.5 h at room temperature and then incubated with the following primary antibodies: anti-CDK6 (1:500, ab79454; Abcam, Cambridge, MA, USA) and anti-GAPDH antibody (1:500; SAB4300645-100UG; Sigma-Aldrich, Merck KGaA) at 4°C overnight. Following incubation with the primary antibody, blots were washed with TBS-0.1% Tween and subsequently incubated with horseradish peroxidase-conjugated goat anti-rabbit (1:2,000, ab6721) or rabbit anti-mouse IgG (1:2,000, ab6709) (both from Abcam) secondary antibodies at 37°C for 2 h. Band intensity was quantified using Immobilon Western Chemiluminescent HRP Substrate (EMD Millipore, Billerica, MA, USA). Experiments were performed in triplicate.
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9

Exosomal Protein Characterization by Western Blot

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We separated 20 μg of exosomal proteins by 10% SDS-PAGE for 90 min at 120 V. The proteins were transferred onto polyvinylidene fluoride membranes (Merck Millipore). Next, we incubated the membranes in blocking solution (5% milk in PBS containing 1% Tween-20) for 1 h at 20°C and then incubated with rabbit monoclonal antibodies against mouse CD9 (1:1,000) (SBI, USA) and CD63 (1:1,000) (SBI) to detect EVs markers. We used monoclonal rabbit anti-mouse β-actin (1:1,000) (Bioss, China) as an internal control. The membranes were washed and subsequently incubated with horseradish peroxidase-conjugated goat anti-rabbit (1:3,000) (Abcam, United Kingdom) for 1 h at room temperature. Finally, we visualized the protein bands using the Piece Fast Western Blot Kit and ECL Substrate (Thermo Scientific), and analyzed the bands using Image Lab software (Bio-Rad, USA).
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10

Immunoblotting Analysis of Apoptosis-related Proteins

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Cells or kidney tissue samples were lysed with lysis buffer containing protease inhibitors. Equal amounts of protein were dissolved on sodium dodecyl sulfate-polyacrylamide gel electrophoresis gels and transferred to polyvinylidene fluoride membranes. After being blocked with 5% nonfat milk, the membranes were immunoblotted with primary antibodies against B-cell lymphoma-2 (Bcl-2), B-cell lymphoma-Associated X (Bax), cleaved cysteinyl aspartate specific proteinase (caspase)-1, Apoptosis associated speck-like protein containing caspase recruitment domain (ASC), Recombinant Human NACHT, LRR and PYD domains-containing protein 3 (NLRP3), DDX5, and GAPDH at a dilution of 1:1000 overnight at 4℃. Following washing, the membranes were exposed to horseradish peroxidase-conjugated goat anti-rabbit (1:5000, Abcam, Cambridge, UK) secondary antibodies, and signals were detected with the enhanced chemiluminescence detection system. All antibodies mentioned above were purchased from Abcam (Cambridge).
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