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21 protocols using novocyte 2040r

1

Quantifying Cellular ROS Production

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Cells were plated in 35 mm dishes (2×106 cells) for 24 h and incubated with 2,7-dichlorodihydrofluorescein diacetate (DCFH-DA; 10 µM; Sigma-Aldrich; Merck KGaA) or 5 µM MitoSOX Red (Thermo Fisher Scientific, Inc.) for 30 min at 37°C in the dark to analyze total ROS and mitochondrial ROS, respectively. Cells were detached by trypsin, collected, resuspended in saline solution and analyzed by a NovoCyte 2040R (ACEA Biosciences Inc.) flow cytometer. Ex/Em of 480/525 was set for the evaluation of total ROS, while Ex/Em of 510/580 was set for the evaluation of mitochondrial ROS. The amount of ROS produced was expressed as fluorescence intensity relative to the one of untreated cells.
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2

Cell Cycle Analysis of SiHa and CaSki Cells

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Cell cycle progression was examined using cell cycle analysis kits (cat no. BL114A, Biosharp Life Sciences). SiHa and CaSki cells (5×105 cells) were collected by centrifugation (106 × g for 5 min) at 4°C and fixed with ice-cold 70% ethanol for 2 h at 4°C. The cell pellets were washed with PBS twice and the staining buffer, PI (20×) and RNase A (50×) (cat no. BL114A, Biosharp Life Sciences) were added. After incubation at 37°C for 30 min, the cells were analyzed by a flow cytometer (NovoCyte 2040R; ACEA Bioscience, Inc.; Agilent Technologies, Inc.) using the NovoExpress software (version 1.4.1; ACEA Bioscience, Inc.; Agilent Technologies, Inc.).
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3

Apoptosis Assay for Cell Lines

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The cells were seeded in a 6-well plate at proper density for 24 h. For the TDB-6 treatment experiment, cells were subsequently exposed to TDB-6 (0, 1, 2, 4 µM). For YM-155 and TDB-6 treatment experiments, the cells were exposed to YM-155 (100 nM), TDB-6 (4 µM), or both. At 48 h later, the treated cells were trypsinized and resuspended in binding buffer, followed by incubation with annexin V-FITC for 15 min and Propidium lodide (PI) for 5 min in the dark. Finally, the stained cells were detected by a NovoCyte 2040R flow cytometer (ACEA, San Diego, CA, USA).
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4

Rhodamine 123 Mitochondrial Assay

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LoVo cells were seeded in a 6-well plate at proper density for 24 h. After treatment with TDB-6 (0, 1, 2, 4 µM) for 48 h, the cells were rinsed with DMEM, followed by incubation with Rhodamine 123 (1 mM) for 30 min at 37 ℃ in the dark. The fluorescently labeled cells were rinsed again and analyzed using a NovoCyte 2040R flow cytometer (ACEA, San Diego, CA, USA).
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5

Annexin V-FITC and PI Staining for Apoptosis

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After treatment, Raw264.7 macrophage cells were double-stained with Annexin V-fluorescein isothiocyanate and propidium iodide (PI) (FITC Apoptosis Detection Kit I; BD Biosciences, San Jose, CA, United States) according to the instructions. Quantification was then performed using a flow cytometer (NovoCyte 2040R; ACEA Bioscience, San Diego, CA, United States) and analyzed using NovoExpress 1.4.1 Software (ACEA Bioscience, San Diego, CA, United States).
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6

Annexin V-FITC/PI Cell Apoptosis Assay

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Apoptosis was detected using Annexin V-FITC/PI cell apoptosis detection kit (C1063, Beyotime Biotechnology, Jiangsu, China). Cells from different groups were digested with trypsin without EDTA, resuspended in the binding buffer, stained with Annexin V-FITC for 15 min and PI for 5 min, and then analyzed by flow cytometry (Novocyte 2040R, ACEA, USA).
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7

Cell Cycle Analysis by Flow Cytometry

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Flow cytometric analysis was performed to determine the effect of DHCR24 on cell cycle distribution. Briefly, cells grown in 6-well plates were treated with shRNA for 48 h. Then, cells were harvested and fixed in 75% ethanol solution. After centrifugation, cells were washed twice with cold PBS, then incubated with RNase A and stained with propidium iodide for 30 min in the dark. Cell cycle distribution was analyzed by flow cytometry (NovoCyte 2040R; ACEA Bioscience, Inc.; Agilent Technologies).
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8

Apoptosis Quantification in HUVECs

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Cells from different groups were digested with trypsin without EDTA, resuspended in calcium‐enriched buffer, stained with Annexin V‐FITC for 5 minutes and PI for 15 minutes and then analysed by flow cytometry (Novocyte 2040R, ACEA, USA). Cell apoptosis was also determined with a Hoechst 33258 kit according to the manufacturer's instructions. The cells were observed under a fluorescence microscope (Olympus) and Hoechst 33258 was detected at an excitation wavelength of 340 nm. For each well, three visual fields were randomly selected. The number of positive‐staining HUVECs and total cells were counted and apoptosis was evaluated by the ratio of positively stained cells to the total number of HUVECs.
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9

Measuring Intracellular ROS in K. mikimotoi

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The intracellular ROS level within K. mikimotoi was measured using a ROS detection kit (Biyuntian, Shanghai, China) with slight modifications. The methods were as follows: (1) after 4, 8, 12, 24, 36, and 48 h of culture, 40 ml of algal solution was centrifuged at 4°C, and the supernatant was immediately discarded to collect algal cells; (2) DCFH-DA probe dye was added, and the mixture was incubated at 37°C for 30 min; (3) the mixture was centrifuged (at 1,000 rpm, 5 min), and the algal cells were washed with PBS; (4) the mixture was centrifuged again to settle the solution, and the supernatant was discarded to obtain the algal cells; (5) after resuspending the cells using PBS, the fluorescence intensity was measured with an excitation wavelength of 488 nm and an emission wavelength of 525 nm using a flow cytometer (Novocyte 2040R, ACEA, United States).
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10

Cell Cycle Analysis by Flow Cytometry

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To analyze cell cycle distribution, a sufficient number (1×106) of stably infected cells was collected, fixed overnight at 4°C in 500 µl 70% cold ethanol and washed three times with PBS. Subsequently, the cells were incubated with 450 µl propidium iodide (PI) and 50 µl RNase A using the Annexin V-APC/PI apoptosis detection Kit (Nanjing KeyGen Biotech, Co., Ltd.) according to the manufacturer's protocol in the dark at room temperature for 1 h. Cell cycle progression was quantified using a NovoCyte 2040R flow cytometer (ACEA Biosciences, Inc.), the data were analyzed using the NovoExpress Software (version1.4; ACEA Biosciences, Inc.).
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