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6 protocols using secinh3

1

Inhibitor Studies in Podosome Formation

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For drug inhibition studies, cells were treated with 30 µM SecinH3 (Tocris Bioscience), 10 µM Golgicide A (Santa Cruz Biotechnology, Inc.), 5 µg/ml BFA (Sigma-Aldrich), 30 µM Y-27632 (Sigma-Aldrich), 25 µM GM6001 (Enzo Life Sciences), and 2 µg/ml C3 transferase (Cytoskeleton, Inc.) in complete medium for 1–2 h or 4 h for GM6001 at 37°C with 5% CO2 and subsequently fixed with 4% PFA. For live-cell imaging, cells were imaged immediately after addition of appropriate inhibitors, which remained in the medium during the entire period of image acquisition. To study the effect of inhibitors on podosomes formed by MEFs plated on RGD lipid bilayer, the cells were treated with appropriate inhibitors 30–45 min after cell seeding on the bilayer.
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2

Neuroscience drug combination protocol

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1-[2-(3,4-Dichlorophenyl)ethyl]−4-methylpiperazine dihydrochloride (BD 1063 dihydrochloride, Cat#: 0883, Tocris), and cocaine hydrochloride were dissolved in 0.9% NaCl. N-[4-[5-(1,3-Benzodioxol-5-yl)−3-methoxy-1H-1,2,4-triazol-1-yl]phenyl]−2-(phenylthio)acetamide (SecinH3, Cat#: 2849, Tocris) was dissolved in DMSO, and then diluted with 25% DMSO/75% glucose solution (5 w/v%).
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3

Synaptic Protein Localization Assay

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Amino-5-phosphonopentanoic acid (D-APV), 6-cyano-7-nitroquinoxaline-2,3-dione (CNQX), tetrodotoxin (TTX), BafilomycinA1, and SecinH3 were from Tocris Bioscience (Cookson, USA). Restriction enzymes were from New England Biolabs (Ipswich, USA). Cell culture media were from Invitrogen (Carlsbad, CA, USA). Soluble horseradish peroxidase (HRP) type VI, 3,3′-Diaminobenzidine (DAB) ( #P6782 and #D8001) and all other chemicals were from Sigma-Aldrich, St. Louis, MO. The following primary antibodies have been used: anti-GFP (#MAB3580; Millipore, Darmstadt, Germany); anti-synaptobrevin-2 (Syb2; #104 202; Synaptic Systems, Goettingen, Germany); anti-actin (#A4700) and anti-Arf6 (#A5230, Sigma); anti-Arf6 (#ARP54598_P050; Aviva, San Diego, CA); anti-Rab5(#108 011 Synaptic Systems); anti-Arf1 (#05–1427; EMD Millipore); anti-V5 (#60708; Invitrogen); anti-β-tubulin (#T8328; Sigma) anti-p38 (Mab5258, EMD Millipore); anti-Homer (#106 011; Synaptic Systems); anti-Vglut1 (#135 304; Synaptic Systems).
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4

Cell Culture and Inhibitor Treatments

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All ID8 sublines were maintained in Dulbecco's modified Eagle medium (DMEM) supplemented with 4% heat‐inactivated Fetal Bovine Serum (FBS), 2 mM L‐Glutamine, 1× Insulin‐TransferrinSelenium (0.01 mg/ml Insulin, 5.5 μg/ml Transferrin, 6.7 ng/ml Selenium) and 10 U Penicillin–Streptomycin (all Gibco). HEK293‐FT cells were maintained in DMEM with 10% FBS, 2 mM L‐Glutamine and 0.1 mM Non‐Essential Amino Acids (NEAA) (all Gibco). Cells were incubated at 37°C, 5% CO2 and routinely tested for mycoplasma contamination. Inhibitors were added at the following concentrations: 10 μΜ Nutlin3A (Merck, SML0580), 10 μM pan‐PI3Ki (LY294002, Merck, 440204), 200 nM PI3Kα‐i (A66, Selleckchem, S2636), 200 nM PI3Kβ‐i (AZD8186, AstraZeneca), 200 nM PI3Kγ‐i (AS605240, Stratech, S1410), 200 nM PI3Kδ‐i (Cal‐101, Stratech, S2226), 20 μM SecinH3 (Tocris, 2849).
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5

Antibody and Reagent Identification for Protein Analysis

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The phospho-(Ser) PKC substrate (pSer PKC substrate) antibody was from Cell Signaling Technology (Danvers, MA, USA). The cytohesin-2 western blot antibody, ARF6 antibody and GAPDH antibody were from Santa Cruz Biotechnology (Santa Cruz, CA, USA). The cytohesin-2 immunoprecipitation antibody was from Thermo Scientific (Loughborough, Leicestershire, UK). Horseradish peroxidase (HRP)-conjugated donkey anti-rabbit, anti-mouse and anti-goat secondary antibodies were from Jackson ImmunoResearch Laboratories (Newmarket, UK). The PKC inhibitor bisindolylmaleimide (BIM) IX (Ro 31-8220) and the inactive analogue BIM V were from Calbiochem (Nottingham, UK). The PKC inhibitors BIM I (GF 109203X), Go 6983 and ruboxistaurin (LY 333531) and the cytohesin-2 inhibitor SecinH3 were from Tocris (Bristol, UK). The GST-GGA3 construct was a generous gift from Professor Sidney Whiteheart (University of Kentucky, USA). Cross-linked collagen-related peptide (CRP) was synthesized by Professor Richard Farndale (University of Cambridge, UK). PE-P-selectin and FITC-PAC1 antibodies were from Emfret Analytics (Eibelstadt, Germany). Luciferin-luciferase was from Chronolog (Labmedics, Stockport, UK). NuPAGE LDS sample buffer was from Invitrogen (Carlsbad, CA, USA). ECL reagent was from GE Healthcare (Amersham, UK). All other reagents were from Sigma-Aldrich (Poole, UK).
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6

Insulin Signaling in Müller Cells

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The rat Müller cells (rMC-1) were obtained as a gift from Vijay Sarthy, Northwestern University, Chicago, Illinois, United States. Cells were cultured in DMEM media that was supplemented with 10% fetal bovine serum (Thermo Fisher Scientific, Waltham, MA, USA) and 1% of antibiotic-antimycotic (Thermo Fisher Scientific). The rMC-1 cells were authenticated using short tandem repeat analysis, contamination for interspecies and mycoplasma (IDEXX Bioresearch, Columbia, MO, USA). For insulin study, cells were serum starved in DMEM for 18 hours and then stimulated with 10 nM insulin (Sigma-Aldrich Corp., St. Louis, MO, USA) in the presence or absence of the inhibitor, SecinH3 (Tocris Bioscience, Bristol, UK). DMSO-treated cells (0.2% final concentration of DMSO) were used as a control. Cells were collected, washed with PBS and stored at −80°C.
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