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53 protocols using lcms 2010ev

1

Characterization of Organic Compounds

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Unless otherwise noted, all solvents and other reagents are commercially available and used without further purification. Purity and characterization of compounds were established by a combination of liquid chromatography-mass spectroscopy (LC-MS) and NMR analytical techniques and was >95% for all compounds. Silica gel column chromatography was carried out using prepacked silica cartridges from RediSep (ISCO Ltd.) and eluted using an Isco Companion system. Melting points were reordered on a MEL-TEMP® apparatus and are uncorrected. 1H- and 13C-NMR spectra were obtained on a Jeol 400 spectrometer at 400 MHz and 100 MHz, respectively. Chemical shifts are reported in δ (ppm) relative to residual solvent peaks or TMS as internal standards. Coupling constants are reported in Hz. High-resolution ESI-TOF mass spectra were acquired from the Mass Spectrometry Core at The Sanford-Burnham Medical Research Institute (Orlando, Florida). HPLC-MS analyses were performed on a Shimadzu 2010EV LCMS using the following conditions: Kromisil C18 column (reverse phase, 4.6 mm × 50 mm); a linear gradient from 10% acetonitrile and 90% water to 95% acetonitrile and 5% water over 4.5 min; flow rate of 1 mL/min; UV photodiode array detection from 200 to 300 nm. Continuous flow (microreactor) experiments were carried out using a Vapourtec R Series Flow Chemistry System.
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2

Purification and Structural Elucidation of Compounds

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To isolate enough material for NMR characterization, 10 × 100 mL cultures were extracted after 48 h. The mycelium and media were extracted with ethyl acetate containing 1% acetic acid, dried over anhydrous MgSO4 and concentrated in vacuo. The crude extract was fractionated using reverse phase C18 flash column chromatography (Fisher Scientific, PrepSep C18 1 g/6 ml) with 20% MeCN:H2O, 40% MeCN:H2O, 60% MeCN:H2O, 80% MeCN:H2O, and 100% MeCN as the mobile phase. The fractions were analyzed in positive and negative mode on a Shimadzu 2010 EV LCMS using the same parameters as above. Compounds 10 and 12 eluted in the 40% MeCN:H2O fraction and were purified by HPLC (Beckman Coulter) using a Luna C18 column (250 × 10 mm; 5μm particle size) and an isocratic condition of 55% MeCN:H2O containing 0.1% TFA with a flow rate of 2.0 mL/min. The tR of 10 and 12 were 28.5 min and 29.5 min, respectively. Compounds 10 and 12 were isolated at 1 mg/L and 0.5 mg/L, respectively, and their chemical structures were elucidated from the spectroscopic data given in Tables S3 and S4, respectively.
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3

Synthesis and Characterization of Anticancer Compounds

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General: All reagents were purchased from Sigma-Aldrich Co. and used without further purification, except for the solvents used for flash chromatography and recrystallization. 1 H NMR spectra were recorded on a Bruker AM 300 at 300 MHz and chemical shifts are given in d referenced to the residual solvent peak. 13 C NMR spectra at 75.5 MHz on the same spectrometer, using chloroform-d (CDCl 3 ), dimethylsulfoxide-d 6 (DMSO-d 6 ). Melting points are uncorrected and were determined in open glass capillaries using a Mel-Temp II apparatus. A Shimadzu 2010-EV LC/MS was used for obtaining a LC/MS spectrum, using methanol or mixture of methanol-water (formic acid 0.1%) as solvents. All LC-MS spectras were obtained under isocratic elution in a reversed phase C 18 column. Microanalyses were performed on a Perkin-Elmer 2400-II Analyzer. Flash column chromatography was carried out on a Merck silica gel 60 plate (230-400 Mesh ASTM). Reaction progress was followed by thin-layer chromatography (Fluka Silica gel/TLC-cards). All solvents used for column chromatography and/or recrystallization were routinely distilled prior to use. Petroleum ether refers to the fraction with bp 40 o -60 o C. The known compounds 13 and 14 were synthesized as previously described [12, 13] for the purpose of evaluation of their antiproliferative activity.
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4

Synthesis and Characterization of Peptides

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PMAP-37, PMAP-37(F34-R), and Chol-37(F34-R) were synthesized by Fmoc solid-phase peptide synthesis at Shanghai Apeptide Biological Technology Co., Ltd. (Shanghai, China). All peptides were purified by HPLC to high purity (≥95%), and the synthesized peptides were identified by MS. The HPLC and MS protocol are as follows. HPLC experiments of PMAP-37 and Chol-37(F34-R) were carried out on Waters 2690 and HPLC experiment of PMAP-37(F34-R) was carried out on SHIMADZU LC-2010HT. The instruments were equipped with a Waters SinoChrom ODS-BP column (5 μm, 4.6 × 250 mm) at a flow rate of 1.0 mL/min using a gradient of 5–65% acetonitrile in water with 0.1% TFA as the mobile phase. UV detection was performed at a wavelength of 220 nm. MS experiments of PMAP-37 and Chol-37(F34-R) were carried out on SHIMADZU LCMS-2010EV and MS experiment of PMAP-37(F34-R) was carried out on Agilent LCMS-6125B. The ESI source conditions were as follow. Nebulizer gas flow: 1.5 L/min; CDL temperature: 250 °C; capillary voltage: 1500 V; T. flow: 0.2 mL/min. The mass scan was in the range of m/z 400–2000.
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5

Characterization of Alanylalanine by LCMS

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Each sample in the previous section was diluted by water up to 10 µL. The final product, alanylalanine, was characterized by LCMS-2010EV electrospray mass spectrometry (Shimadzu, Kyoto, Japan) in positive-single ion monitoring (SIM) mode at m/z 199.20 using the analytical column Luna C8(2) 100 Å (150 mm × 4.6 mm, Phenomenex). The mobile phase consisted of 65% methanol. The flow rate was set at 0.2 mL/min and the injection volume was 8 µL. The column temperature was 60 °C. The peak area was calculated according to the protocol of the manufacturer (Shimadzu, Kyoto, Japan).
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6

Spectroscopic Characterization of Triterpenoid Compounds

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The spectra were recorded at the Center for the Collective Use “Chemistry” of the Ufa Institute of Chemistry of the UFRC RAS and RCCU “Agidel” of the UFRC RAS. 1H and 13C NMR spectra were recorded on a “Bruker AM-500” (Bruker, Billerica, MA, USA, 500 and 125.5 MHz, respectively, δ, ppm, Hz) in CDCl3, internal standard tetramethylsilane. Mass spectra were obtained on a liquid chromatograph–mass spectrometer LCMS-2010 EV (Shimadzu, Kyoto, Japan). Melting points were detected on a micro table “Rapido PHMK05” (Nagema, Dresden, Germany). Optical rotations were measured on a polarimeter “PerkinElmer 241 MC” (PerkinElmer, Waltham, MA, USA) in a tube length of 1 dm. Elemental analysis was performed on a Euro EA-3000 CHNS analyzer (Eurovector, Milan, Italy); the main standard is acetanilide. Thin-layer chromatography analyses were performed on Sorbfil plates (Sorbpolimer, Krasnodar, Russian Federation), using the solvent system chloroform-ethyl acetate, 40:1. Substances were detected by 10% H2SO4 with subsequent heating to 100–120 °C for 2–3 min. Compounds 1, 2 [57 (link)], 3, 17–20 [24 ], 4, 6, 9, 11, 12, 15, 16, 22, 23 [58 (link)], 5 [31 (link)], 7 [59 ], 8, 13 [22 (link)], 10, 21 [30 ], 14 [60 (link)], 25 [61 (link)], 28 [62 (link)], and 35 [63 ] were prepared by the literature methods. Oleanolic acid 27 was purchased from Xian RongSheng Biotechnology Co., Ltd.
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7

Phytochemical Analysis of P. friedrichstalianum

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The fractions obtained by partition of P. friedrichstalianum polar extract were analyzed in a liquid chromatograph LC-10AD Shimadzu (Kyoto, Japan) coupled to mass spectrometer Shimadzu LCMS-2010 EV (Kyoto, Japan). The injection of samples was performed in a loop injector Rheodyne 5 µL. A C18-column Shimadzu-5 µm (50 × 4.6 mm i.d.) was used. The mobile phase was acetonitrile–formic acid 0.1% (solvent A) and formic acid–H2O 0.1% (solvent B). The samples were eluted with a linear gradient which started with 5% to 60% of solvent A in 27 min; the solvent flow was set at 0.4 mL/min. The eluted compounds were monitored at two wavelengths λ 280 and 370 nm. The mass spectrometer was operated in positive and negative electrospray ionization (ESI) mode, 1.5 kV, CDL 300 °C, block 240 °C, gas flow (N2) to 1.5 L/min, CDL voltage 150 kV, Q array RF voltage 150 V, and detector voltage 1.5 kV. The positive and negative ions were detected between m/z 50 and 1000 u.
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8

HPLC-ESI/MS Analysis of GSTeH

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This was performed on an HPLC-ESI/MS system (Shimadzu LC/MS-2010EV, Tokyo, Japan). All separations were performed on a
Tigerkin C18TDE column (5 μm, 2.1 × 150 mm, Dalian Sipore Co., Ltd), with a liquid phase flow rate of 0.2 mL
min−1 and column temperature of 30 °C. The liquid phase consisted of 0.1% formic acid in water and
acetonitrile at a ratio of 100:1 (v/v). Absorption at 220 nm was used as the detection wavelength of UV spectrometry detector. 40
μL of 0.05 m Na2TeO3, 2.1 mL of 0.1 m pH 7.1 BR buffer, and 80 μL of 0.1
m GSH were mixed and incubated for 30 s. 10 μL of the resulting mixture was mixed with 20 μL of 0.1
m NADPH and 8 μL of GR and were injected into HPLC-ESI/MS system. Electrospray ionization instrument in the
positive polarity was used for the analysis of GSTeH with capillary voltage of 4.5 kV, dry gas of 1.5 L min−1,
and nebulizer 0.02 MPa.
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9

Comprehensive Characterization of Organic Compounds

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The reaction products were characterized by 1H and 13C NMR spectra that were recorded on spectrometers Bruker Avance 400 NMR (400.13 MHz and 100.62 MHz) and Bruker Ascend III HD 500 (500.17 MHz and 125.78 MHz), internal standard TMS, solvent DMSO-d6. The homo- and heteronuclear 2D experiments were performed by the standard pulse sequences of Bruker. IR spectra were recorded on a Bruker Vertex-70V FTIR and Specord M80 spectrometers. Electrospray ionization (ESI) mass spectra were obtained on a HPLC massspectrometer LCMS-2010EV (Shimadzu) in positive and negative ions mode at the corona discharge needle ionizing electrode and ionizing capillary potential of – 3.5 kV. Sample solution (direct syringe sample inlet) under ESI conditions was in methanol (acetonitrile), mobile phase was acetonitrile/water, 95/5. Mass-spectra was recorded on a device MALDI TOF Autoflex III firm Bruker (compounds 2a-e) with sinapinic acid as a matrix (see Supplementary data). Elemental analysis was performed on a Carlo Erba 1106 elemental analyzer. Melting points were determined on a Kofler hot-stage microscope and utilized uncorrected. Individuality and purity of synthesized compounds were controlled by means of TLC on Silufol UV-254 plates; I2 was used as developer.
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10

Analytical Techniques for Compound Characterization

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Silica gel 70PF 254 Plate-Wako was used for TLC (thin layer chromatography) and column chromatography was performed on Wakogel®, 60 N, (particle size, 63–212 μm) or Wakogel®, C-300E, (particle size, 45–75 μm). Melting points were obtained on a Yanaco micro melting point apparatus and are uncorrected. Low-resolution mass spectra (LRMS) were recorded on Shimadzu LCMS-2010EV (ESI) and high-resolution mass spectra (HRMS) were recorded on Shimadzu LCMS-IT-TOF (ESI) or JEOL GC mate II (EI). 1H NMR spectra were recorded using Bruker AV 300 spectrometer, chemical shifts (δ) are quoted in parts per million (ppm) referenced to tetramethylsilane (0 ppm) or the residual solvent peak. 13C NMR spectra were recorded on the same spectrometer at 75 MHz, using the residual solvent peak as the internal reference. Optical rotations were recorded using a HORIBA SEPA-300 polarimeter.
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