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15 protocols using mounting medium

1

Immunohistochemical Analysis of TRPA1, CLR, and RAMP1 in Mouse and Human Nerves

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Anesthetized mice were transcardially perfused with PBS and 4% paraformaldehyde. Trigeminal and sciatic nerves were removed, postfixed for 24 h, and paraffin-embedded. Human and mouse formalin-fixed paraffin-embedded (FFPE) sections (5 μm) were incubated with primary antibodies: TRPA1 (#ab58844, rabbit polyclonal, 1:400, Abcam, Lot: GR165165-21), S100 (#ab14849, mouse monoclonal [4B3], 1:300, Abcam, Lot: GR3233892-2), CLR (#NLS6731, rabbit polyclonal, 1:30, Novus Biologicals, Lot: QC58878-190422), RAMP1- Alexa Fluor 594 (#ab241335, rabbit polyclonal, 1:200, Abcam Lot: GR3247267-4), diluted in fresh blocking solution (PBS, pH 7.4, 2.5% normal goat serum, [NGS]). Sections were then incubated with the fluorescent polyclonal secondary antibodies Alexa Fluor 488 and 555 (#A32731, Lot: VA295501, #A32727, Lot: UL287768, 1:600; Invitrogen), and coverslipped using the mounting medium with DAPI (Abcam). Images were acquired by a Zeiss Axio lmager 2, Zeiss ZEN imaging 2020. The Pearson correlation (Rcoloc) value for RAMP1 and S100 in the colocalization studies were calculated using the colocalization Plugin of the ImageJ software (ImageJ 1.32 J, National Institutes of Health).
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2

Immunohistochemical Analysis of Testis Tissue

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Paraffin-embedded consecutive testis tissue sections (5 μm in thickness) were deparaffinized with xylene, dehydrated with alcohol, and subjected to heat-mediated 1× target retrieval solution at pH 6.0 (DAKO, Glostrup, Denmark). Endogenous peroxide activity was blocked with peroxidase-blocking solution (DAKO) for 15 min and washed with 1× PBS buffer twice (5 min each). Non-specific bindings of testis section were further blocked with serum block solution for 10 min (DAKO) and incubated with primary antibodies cleaved caspase 3 (1:100, D175, Cell Signaling Technology, Beverly, MA, USA), StAR (1:100, D10H12, Cell Signaling Technology, Beverly, MA, USA), and Grp 78 (1:100, Ab 21, 685, Abcam Cambridge, MA, USA) at 4 °C overnight. Sections were then washed with 1× PBS twice (5 min each) and incubated with a horseradish peroxidase (HRP)-labeled micropolymer conjugated secondary antibody (MP-7451, anti-rabbit IgG; vector Labs, Burlingame, CA, USA) at room temperature for 1 h. Prior to incubation, sections were rinsed with AEC substrate chromogens (SK-4205, ImmPACT AEC Peroxidase substrate; vector Labs, Burlingame, CA, USA). Slides were then rinsed with deionized water for 5 min, counter-stained with hematoxylin, rinsed with distilled water, and mounted with mounting medium (Abcam, Cambridge, MA, USA).
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3

Immunofluorescence Staining of Stretched Cells

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We used PBS to wash cells and then 4% paraformaldehyde to fix cells for 20 min after stretching. Triton X-100 (0.1%, Solarbio, Beijing, China) was used to permeate the cytomembrane. Cells were subsequently blocked with goat serum (10%, Solarbio, Beijing, China) for 1 h. Then, the primary antibodies were incubated with cells overnight at 4 °C. The secondary antibodies were incubated with cells for 1 h at room temperature after washing twice. DAPI was used to stain the cell nucleus. For 63× microscopy images, silicone membranes were cut from Bioflex culture plates and transferred to glass slides, and sealed with mounting medium (Abcam, Cambridge, UK). The Leica DMi8 microsystems (Lecia, Wetzlar, Germany) were utilized to visualize and picture cells. Semi-quantification analysis was implemented by the ImageJ software.
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4

Immunofluorescence Staining of E-cadherin and Vimentin

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Cells were fixed with 4% formaldehyde (Wako, Osaka, Japan), permeabilized with 0.1% Triton X-100, and blocked with 1% bovine serum albumin prepared in phosphate-buffered saline (PBS). Cells were incubated with an anti-human E-cadherin (ab40772, Abcam) or vimentin antibody (ab92547, Abcam) at 4°C overnight and then with donkey anti-rabbit IgG (ab150073, Alexa Fluor® 488, abm Inc.) or goat anti-rabbit IgG (# A-11011, Alexa Fluor® 568, Thermo Fisher) for 2 h. Finally, cells were washed and mounted with mounting medium containing DAPI (Abcam). Images were acquired using a confocal microscope (LSM800; Carl Zeiss, Inc., Jena, Germany).
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5

Immunohistochemical Analysis of Tissue Sections

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Tissue sections were deparaffinized and then blocked with CAS‐Block (Invitrogen, CA) for 1 h. Incubated the sections with primary antibody (NOX4, 4HNE, CD31; Abcam, USA) for 2h at 37°C followed by incubation with secondary antibody linked with HRP for 1 h at 37°C. Place sections in solution for DAB reaction for 3min. At last, sections were then stained with haematoxylin for 2 min, washed with PBS, and mounted with mounting medium (Abcam, USA). Capillary density was assessed based on the capillary/myocyte nucleus (C/M) values as previously described.25
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6

Immunohistochemistry Staining Protocol

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For IHC, FMs were sandwiched in IHC cassettes, fixed in 4% formalin, embedded in paraffin and consecutive sections of 4 µm were prepared. Slides were then deparaffinized and rehydrated, and different heat-mediated antigen retrieval methods were performed according to the manufacturer’s guidelines (Table S6). Sections were then blocked for 1 h at RT in 1.5% bovine serum albumin (BSA)/PBS containing 0.5% Tween-20, and the primary antibody was incubated overnight at 4 °C in blocking solution in a humidified chamber. The next day, sections were rinsed three times with 0.1% Tween-20/PBS and were incubated the corresponding secondary antibody in blocking solution for 5 h at RT. Then, the peroxidase substrate ImmPACT© AMEC Red (Vector Laboratories) was applied to the slides for the suitable time, and the sections were counterstained with hematoxylin (Vector Laboratories) and mounted in glass slides in mounting medium (Abcam). A coverslip was added on top and slides were imaged on an inverted Zeiss microscope. Images were processed with Fiji from ImageJ [55] (link), [56] (link).
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7

Multiparametric Immunofluorescence Imaging

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Cells were fixed using 4% paraformaldehyde in cold DPBS and permeabilized using 10.5% Triton X-100 in DPBS for three minutes. A blocking solution with 5% bovine serum albumin (BSA) was then added. The cells were incubated with IL-6, FLG, IL-4, and IL-1β primary antibodies overnight, followed by incubation with a FITC-labeled secondary goat anti-Rabbit IgG (H&L) antibody (Abcam) for one hour. Nuclei were stained with 4′,6-Diamidino-2-phenylindole, dihydrochloride (DAPI) included in the mounting medium (Abcam). After, all cells were visualized using a Leica SP8 confocal microscopy (Philadelphia. PA, USA).
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8

Immunofluorescence Analysis of Cardiomyocyte Size

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At first, use the cold PBS to wash cultured cardiomyocytes for three times. Then, 4% paraformaldehyde was utilized to fix cells for 15 min. Cardiomyocytes were then washed with cold PBS again so that the cardiomyocytes could be blocked with 10% normal goat serum and 1% BSA (Sigma, USA). Next, cardiomyocytes were incubated with anti-α-actinin (1:500, Sigma, USA) in a dark room at 4 °C overnight and were further incubated with secondary antibody (1:1000; Molecular Probes, USA) at a normal temperature for 1 hour. Next, the slides were covered with coverslips. The nucleus was stained with mounting medium (Abcam, USA) which containing Hoechst33342 (Beyotime, China). At length, a fluorescence microscope (Olympus, Japan) helped us to observe and photograph cells. Cell surface area was quantified by detecting 50 random cells from three independent experiments. Thereafter, the average value was used for further analysis. Cell surface areas were assessed by ImageJ software by observing the 100–200 cardiomyocytes in 30–40 fields.
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9

Immunohistochemical Staining of Tissue Samples

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The specimen sections were deparaffinized and rehydrated. Then, endogenous peroxidase was blocked using a hydrogen peroxide block (Abcam, UK). The specimens were washed, and antigen retrieval was performed by heating in a 10 mM citrate buffer. After protein block solution (Abcam, UK) was applied to reduce nonspecific background staining, the specimens were incubated with primary antibodies overnight at room temperature in a humidified chamber. The antigen-antibody complex was then detected using a Mouse and Rabbit Specific HRP/DAB (ABC) Detection IHC Kit (Abcam, UK), following the manufacturer's instructions. The sections were counterstained with hematoxylin solution (Mayer's modified, Abcam, UK) and dehydrated before mounting with mounting medium (Abcam, UK). As a negative control, the primary antibody was replaced with SignalStain antibody diluent (Cell Signaling Technology, USA). The stained specimens were examined under a Motic BA210 microscope.
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10

Immunofluorescence Staining of Spleens and Lymph Nodes

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Spleens and draining lymph nodes (dLNs) were isolated, spleens were split to three pieces, tissues were embedded in Tissue-Tek® (Sakura, Staufen) and frozen at −80 °C. 8-µm thick slices were cut with Cryotom (Thermo Scientific). Slices were fixed with acetone, air dried, and frozen at −20 °C. For stainings, slides were thawed at RT for 15 min, rehydrated in PBS or PBS 1% BSA (dLNs) for 5 min, blocked for 30 min in IHC-Blocking buffer or PBS 1% BSA (dLNs) and then stained with the following antibodies: CD4-Alexa Fluor 647, B220-Alexa Fluor 488, IgM-Cy5 (Southern Biotech), IgD-Alexa Fluor 488, MoMa-Biotin (Southern Biotech), streptavidin-TRITC (Southern Biotech), and DAPI (Abcam) in IHC-staining buffer for 30 min at RT in dark humid chamber. Then, slides were washed twice for 10 min with 0.05 % Tween20 in PBS and one time with PBS only. Slides were then mounted with mounting medium (Abcam) and analyzed with Zeiss Axio Lab.A1 (Carl Zeiss) or Leica SP5 Confocal microscope. B cell follicles were identified by B220 + areas at ×100 total magnification and borders drawn by isolate/draw tool. Then, a channel was switched to CD4 signal, and CD4 MFI of T cells within the isolated region analyzed by Fiji70 (link). In average about 3–6 non-sequential follicles were counted per animal. Blind analysis was applied to all image analysis.
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