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Alexa546 conjugated anti rabbit igg

Manufactured by Thermo Fisher Scientific
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Alexa546-conjugated anti-rabbit IgG is a secondary antibody that binds to rabbit primary antibodies. It is labeled with the Alexa Fluor 546 fluorescent dye, which can be detected using standard fluorescence detection methods.

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12 protocols using alexa546 conjugated anti rabbit igg

1

Immunofluorescence Staining of Cellular Markers

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PSCs or tumor cells were seeded in eight-well slide dishes (Ibidi, Gräfelfing, Germany) at 5 × 104/well and incubated for 24 h. Then cells were fixed with 4% formaldehyde and blocked with normal horse serum for 30 min. Slides were incubated with primary antibody (anti-αSMA, 1:200, Abcam, Cambridge, UK; anti-IL-17RB, 1:200, ProteoTech, Attendorn, Germany; anti-vimentin, 1:200, Cell Signaling Technology, Danvers, MA, USA; anti-ATP5β, 1:500, Abcam, Cambridge, UK; anti-Tom20, 1:400, Abcam, Cambridge, UK) overnight at 4 °C. Subsequently, cells were incubated with Alexa 546-conjugated anti-mouse IgG (Thermo Fisher Scientific, Waltham, MA, USA) or Alexa 546-conjugated anti-rabbit IgG (Thermo Fisher Scientific, Waltham, MA, USA) for 1 h at room temperature. Finally, nuclear DNA was counterstained with DAPI (4′,6-diamidino-2-phenylindole, 1 mg/mL) for 15 min. After washing with PBS, images were acquired using a fluorescence microscope (to generate Figure 1C, InCellis Cell Imager, Bertin Instruments, Montigny-le-Bretonneux, France) or a confocal microscope (to generate Figure 6A, Zeiss Meta 710, Zeiss, Jena, Germany).
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2

Probing ERK1/2 Signaling in Ciona Oocytes

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Isolated Ciona follicles were de-folliculated in ASW containing 0.1% collagenase and 0.1% actinase E for 1 hr with gentle agitation. After washing, the oocytes were treated with 5 μM CiVP for 0, 5, 10, 20, 40, and 60 min and fixed with 3.7% PFA in ASW at 4°C overnight. For MEK inhibition, oocytes were pretreated with 10 μM U0126 for 1 hr before CiVP stimulation. Oocytes were treated with 0.2% Triton X-100% and 0.5% blocking reagent (PerkinElmer Japan Co., Kanagawa, Japan, FP1020) and then incubated with antibody against pERK1/2 (Cell Signaling Technology [CST], Danvers, MA, 9101S) in Can Get Signal Immunostain Solution A (Toyobo, Osaka, Japan) for 1.5 hr and Alexa 546–conjugated anti-rabbit IgG (Thermo, A11035) for 1.5 hr. Signal was observed using a Leica M205 AF fluorescence stereomicroscope and quantified using Fiji software (Schindelin et al., 2012 (link)). The specificity of the anti-pERK1/2 antibody against pCiErk1/2 was confirmed by Western blotting and immunofluorescence analyses (see below and Figure 4—figure supplement 1).
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3

Imaging Assay for Toxoplasma Gondii Invasion

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Confluent HFF monolayers grown in clear bottomed black-sided 96-well plates were challenged with 1 × 104 tachyzoites and incubated for 1 h at 37°C with 5% CO2. Monolayers were then washed once with DMEM containing 1% v/v FBS before incubating with DMSO vehicle only or compound. Monolayers were fixed with 2% v/v PFA 12 h, 24 h, and 36 h after compound addition. After blocking and permeabilization in 0.2% v/v Triton X-100 and 1% w/v bovine serum albumin, samples were incubated with Mab 45.36 against TgIMC1 for 2 h (3.7 μg/ml) at 23°C. Monolayers were washed 3 times with blocking buffer before incubation in the dark with a 1:1,000 dilution of Alexa546-conjugated anti-rabbit IgG (Thermo Fisher) for 1 h at 23°C. The number in parasites in each of 50 vacuoles per sample were counted blind.
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4

Immunofluorescence Analysis of Mitotic Spindle

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MEF or HeLa cells were fixed with 4% (w/v) ultra-pure electron microscopy-grade paraformaldehyde for 20 min at 37 °C and permeabilized with 0.2% Triton X-100 for 10 min at room temperature. The cells were subsequently blocked with 5% (w/v) BSA and Block Ace Powder (DS Pharma Biomedical Co., Ltd., Osaka, Japan) in PBS for 1 h at room temperature, followed by incubation with a combination of 2 of the following antibodies for 1 h at room temperature: anti-p80 antibody23 (link), anti-NuMA antibody (Bethyl Laboratories, Montgomery, USA), anti-γ tubulin antibody (Sigma), and anti-β tubulin antibody (Abcam). The samples were washed off with PBS, and subsequently incubated with Alexa 488-conjugated anti-mouse IgG or Alexa 546-conjugated anti-rabbit IgG (Thermo Fisher Scientific, MA, USA) that contained 400 nM 4′,6-diamidino-2-phenylindole (DAPI) for 1 h at room temperature. Slides were mounted in FluoSave Reagent (EMD Millipore, Darmstadt, Germany), and images were obtained with a laser scanning confocal microscope (LSM700, Carl Zeiss, Oberkochen, Germany).
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5

NF-κB Regulation of 5-FU Cytotoxicity

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Sa3 cells were cultured on sterile 18-mm round coverslips. After reaching 70−80% confluence, the cells were treated with 5 mg/mL 5-FU for 1 or 3 h. For immunocytochemistry, the cells were fixed with 3.0% formalin for 30 min and then permeabilized with 0.1% Triton X-100 in PBS for 2 min at 4°C. After blocking of nonspecific binding sites, cells were incubated with anti-NF-κB antibody (sc-372) (Santa cruz) diluted 1∶200 in 4% BSA in PBS overnight at 4°C, followed by Alexa 546-conjugated anti-rabbit IgG (Molecular Probes, Eugene, OR, cat no A11010), diluted 1∶500 in 4% BSA in PBS for 60 min at ambient temperature. The samples were mounted and examined under a microscope equipped with epifluorescence illumination (ECLIPSE Ti-U, Nikon). To exmamine the effect of NF-κB on 5-FU-suppressed cellular viability, Sa3 cells incubated with NF-κB inhibitors, 5 µM BAY 11-7085 (Enzo Life Sciences, cat no EI-279) and 200 µM Caffeic acid phenethyl ester (CAPE) (Calbiochem, San Diego, CA, cat no 211200) for 1 h. Then cells were treated with 5 mg/mL 5-FU for 24 h and cellular viability was mesured by WST-8 assay.
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6

Fluorescent Labeling of vGLUT2 Neurons

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Preparation of PAG sections (n = 3) after FG injection into the MRF and the procedure until blocking with 1.5% blocking solution is described in the section on ISH for vGLUT2 mRNA. After blocking, the sections were incubated with a mixture of sheep horseradish peroxidase-conjugated anti-DIG antibody (1:20, Roche Diagnostics Corp.) and rabbit anti-FG antibody (1:1000, Invitrogen) overnight at RT. Then the sections were incubated for 30 min in biotin-conjugated tyramide (1:50 in amplification diluent, PerkinElmer, Waltham, MA). Following several washings, the sections were incubated with a mixture of Alexa 488-conjugated streptavidin and Alexa 546-conjugated anti-rabbit IgG (1:500, Molecular Probes, Eugene, OR) for 2h at RT.
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7

Antibodies and Lectins for Cell Analysis

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The following antibodies and lectins were used: anti-myc (mouse, clone 4A6; Millipore; catalog no.: 05-724), anti-BACE1 (mouse, clone 1A11, generous gift from Dr Bart De Strooper (40 (link))), anti-GAPDH (mouse, clone 6C5; Merck Millipore; catalog no.: MAB374), anti-Golgin-97 (rabbit, clone D8P2K, Cell Signaling Technology; catalog no.: 13192S), anticalnexin (rabbit, abcam; catalog no.: ab22595), anti-N-cadherin (rabbit, abcam; catalog no.: ab18203), horseradish peroxidase (HRP)–conjugated antimouse IgG (GE Healthcare; catalog no.: NA931V), HRP-conjugated anti-rabbit IgG (GE Healthcare, Amersham; catalog no.: NA934V), DSA (J-Chemical; catalog no.: J105), SSA letin (J-Chemical; catalog no.: J118), biotinylated RCA (Vector Laboratories; catalog no.: B-1085), Alexa546-conjugated anti-rabbit IgG (Invitrogen; catalog no.: A10040), and Alexa488-conjugated antimouse IgG (Invitrogen; catalog no.: A21202). DSA and SSA were conjugated to HRP using a Peroxidase Labeling Kit-NH2 (Dojindo), according to the manufacturer’s protocol.
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8

Immunohistochemical Analysis of ASIC1 and Parvalbumin

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Rats were injected with tribromoethanol (200 mg/kg, i.p.) for anesthesia, and transcardially perfused with isotonic 0.1 M phosphate buffer (pH 7.4), followed by isotonic 4% PFA. Then, the brain was fixed in 4% PFA at 4°C overnight and cryoprotected in 20–30% sucrose in 0.1 M phosphate buffer. Briefly, sections (20 μm) were fixed with 4% PFA and washed with 0.3% Triton X-100/PBS. Subsequently, the sections were incubated for 1 h in blocking serum (5% normal donkey serum in 0.2% Triton-X 100/PBS) at room temperature and then with primary antibodies (anti-ASIC1, Alomone Labs, Jerusalem, Israel; anti-Parvalbumin, Swant, Marly1, Switzerland) at 4°C overnight. Finally, the sections were washed with PBS and incubated with species-matched secondary antibodies (Alexa 488-conjugated anti-mouse IgG; Alexa 546-conjugated anti-rabbit IgG, Invitrogen) at room temperature for 1 h. The images were captured using the Evos FL auto 2 microscope (Invitrogen).
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9

Comprehensive Antibody Validation Protocol

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Anti-Aurora B (ab2254), anti-INCENP (ab36453) and anti-HA (16B12; ab130275) antibodies were obtained from Abcam. Anti-Plk pT210 (sc-135706) and normal rabbit IgG were obtained from Santa Cruz Biotechnology. Anti-Cdc7 antibody was obtained from MBL. Anti-Aurora B pT232 antibody (Poly6361) obtained from BioLegend was used only for immunostaining. Anti-Histone H3 pS10 rabbit antibody was from Upstate. Anti-Histone H3 pS28 antibody was prepared in house in rat70 (link). Anti-CENP-A pSer7 antibody (2187) was from Cell Signaling Technology. Antibodies against Tubulin, Aurora-A and FLAG (M2) were obtained from Sigma. Alexa 488 conjugated anti-rabbit IgG, Alexa 546 conjugated anti-rabbit IgG, Alexa 488 conjugated anti-rat IgG, and Alexa 647 conjugated anti-rabbit IgG, obtained from Invitrogen, were used for immune-staining or FACS staining.
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10

Subcellular Localization of ABCG1 and ABCG4

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HEK293 cells were transfected with pEGFP/flotillin-1-GFP plus pcDNA3.1(+)/ABCG1, pcDNA3.1(+)/ABCG1-K120M, pcDNA3.1(+)/ABCG4, or pcDNA3.1(+)/ABCG4-K120M. After 24 h of transfection, cells were subcultured on glass cover slips treated with poly-L-lysine (Sigma). After 48 h of transfection, cells were either fixed with cold methanol or with 4% paraformaldehyde in PBS+(phosphate-buffered saline containing 0.1 g/l of CaCl2 and MgCl2·6H2O), and permeabilized with 0.4% TritonX-100 in PBS+ for 5 min. To reduce nonspecific binding of antibodies, the cells were incubated in 10% goat serum in PBS+. Then, the cells were incubated for 1 h with a rabbit polyclonal anti-ABCG1 or anti-ABCG4 antibody, and then incubated with fluorescent Alexa546-conjugated anti-rabbit IgG (Invitrogen) for 1 h. Cells were directly visualized with a 63x Plan-Neofluar oil immersion objective using a Zeiss confocal microscope (LSM700).
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