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14 protocols using kalliope software

1

Lipopeptide Nanoaggregate Hydrodynamic Diameters

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The hydrodynamic diameters of the lipopeptide nanoaggregates were examined by the Litesizer 500 (Anton-Paar GmbH, Graz, Austria) at 25 °C. The measurements were carried out at various lipopeptide concentrations ranging from 0.5 to 2 mM and from 0.25 to 2 mM, in water and PBS, respectively. Two-fold serial dilutions were used to obtain the sequential concentrations. Each sample was sonicated for 10 min followed by incubation for 1 h at 25 °C and transferred to the polystyrene cuvette. The detector was positioned at a side scatter position (90°). The analysis of the obtained results and report generation was performed with KalliopeTM software (Anton-Paar GmbH, Graz, Austria).
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2

Dynamic Light Scattering of NTS-Polyplex Nanoparticles

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The Litesizer DLS 500 (Anton Paar, Graz, Austria) was used to measure the size and charge of NTS-polyplex NPs harboring either the pTracer-rNurr1-V5 or the pEGFP-N1 prepared in DMEM without phenol red. First, the diameter distribution was determined by dynamic light scattering in 1 mL of NTS-polyplex NPs at RT (25°C, angle 90°) using a disposable cuvette (Sarstedt, Nümbrecht, Germany). Then, the zeta potential was measured in 50 μL of NTS-polyplex NPs using a Univette Low Volume and 4 V. The dataset was processed using the KalliopeTM Software (Anton Paar).
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3

Zeta Potential Characterization of EVs

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The zeta potential of three independent preparations of EVs, EV mimicking liposomes, and DOPC-Chol liposomes (n = 3) was determined with a Litesizer TM 500 (Anton Paar GmbH, Graz, Austria) using electrophoretic light scattering (ELS). After appropriate dilution in PBS samples were transferred to a Univette Cuvette (Anton Paar GmbH, Graz, Austria). The electrophoretic mobility µ was then measured after 60 seconds of equilibration time at +25 °C at an automatic voltage adjustment of 5.0 V. 100 runs were performed in series mode with three repetitions and the zeta potential ζ calculated according to the Smoluchowski equation using the Kalliope TM software (Anton Paar GmbH, Granz, Austria) provided with the instrument. The following parameters were assumed: solvent refractive index: 1.3303, solvent viscosity: η = 0.8903 mPa • s, solvent relative permittivity: εr = 78.37.
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4

Quantitative Analysis of Cell Populations

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All experiments were repeated in triplicate and data are reported as means ± SD across three independent replicates unless otherwise stated. Groups with significant differences were determined using Student’s t test (when two groups were compared) and one-way ANOVA with post-hoc Tukey test (when three or more groups were compared) completed in MATLAB software (MathWorks, Natick, MA). Differences were considered significant at p < 0.05. Flow cytometry data was analyzed using NovoExpress software (ACEA Biosciences, San Diego, CA). DLS and zeta potential data were analyzed using Kalliope software (Anton Paar, Graz, Austria).
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5

Particle Characterization by Light Scattering

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The zeta potential (ZP) and hydrodynamic diameter (HD) of the prepared particle dispersions were determined on a Litesizer500, Anton Paar (Graz, Austria) particle size analyzer at a temperature of 25 °C. The ZP was measured by electrophoretic light scattering (ELS), which measures the speed of the particles in the presence of an electric field. The HD was measured by dynamic light scattering (DLS). Particles suspended in a liquid are constantly undergoing random motion, and the speed of this motion depends on the size of the particles—smaller particles move faster than larger ones. Before analysis, the dispersion was stirred and adjusted to pH 4 with acetic acid, if necessary. For carrying out the measurements, a diluted sample was poured into an omega cuvette for ZP and size evaluation. The data were collected using Kalliope software (Anton Paar, Graz, Austria).
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6

Liposome Size Characterization by DLS

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The LUV size distribution was determined using a Litesizer 500 dynamic light scattering instrument with the Kalliope software (Anton Paar). Using disposable cuvettes with 1.0 ml sample volume and a lipid concentration of 50 μM in Na buffer, the transmittance was ≈88%. The refractive index and viscosity of the Na buffer were set to 1.3318 and 0.9064 cP, respectively, the default settings in Kalliope. The default correlation function and fitting curve were used to calculate the diffusion coefficient, mean hydrodynamic diameter (dLUV), and the polydispersity index (PDI), defined as (σ/dLUV)2, where σ2 denotes the variance of the size distribution (e.g., Clayton et al., 2016 (link)). Each sample was tested 1 d after extrusion with three independent measurements and at least seven repeats in each measurement. There was only one discernable peak (Fig. S2), with dLUV = 130 ± 5 nm and a PDI of 0.09 ± 0.04 (n = 9). A PDI < 0.1 is considered to indicate a monodisperse sample (Clayton et al., 2016 (link)). For an LUV sample with dLUV = 130 nm and a PDI = 0.06, 10% of the LUVs will have a diameter <87 nm and 10% of the LUVs will have a diameter >160 nm.
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7

Dynamic Light Scattering of Virus Particles

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The average size of live, inactivated, and inactivated split viruses was assessed in a Litesizer 500 dynamic light scattering (DLS) instrument (Anton Paar) at an angle of 175° with 10 × 12 × 45 mm polystyrene cuvettes (Sarstedt) and 1 mL of sample. Triplicate measurements were performed per sample, each with 11 runs, and processed with the Kalliope software (Anton Paar). Live and inactivated virus samples were diluted 1:1,000 in 0.22 µm filtered PBS (pH = 7.4), while inactivated split virus samples were diluted 1:100.
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8

Formulation and Characterization of Polyplexes

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Polyplexes were prepared by diluting 25 kDa branched polyethylenimine (bPEI) and RNA duplexes (either Cy5-tagged nonsilencing siRNA (siCy5) or β-Catenin siRNA (siβCat)) in 10 mM HEPES (4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid) buffer (pH 7.2). bPEI and siRNA duplexes were mixed at an N/P ratio of 6:1, vortexed (5 s) and incubated at room temperature for 20 min (siRNA sequences are listed in the Supporting Information, Table S1). Polyplexes were diluted in HEPES buffer to an RNA concentration of 333 nM for ζ potential measurements or to 200 nM for DLS measurements. DLS and ζ potential measurements were obtained using a LiteSizer 500 (Anton Paar, Graz, Austria) and analyzed with Kalliope software (Anton Paar, Graz, Austria). For TEM imaging, drops of sample solution were placed on poly-l-lysine-coated 400 mesh formvar copper grids (Electron Microscopy Sciences, Hatfield, PA). Grids were then dried and counterstained with 2% uranyl acetate before imaging on a Zeiss LIBRA 120 TEM.24 (link)
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9

Dynamic Light Scattering of Droplet Formulations

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Hydrodynamic diameter (Dh) and intensity-weighted size distribution of the droplets in the formulations were analyzed by DLS using Litesizer 500 device (Anton Paar GmbH, Graz, Austria). The formulations were taken from the previous experiment and poured carefully into a quartz cell (Hellma Analytics, Müllheim, Germany) to avoid air bubbles. The measurements were performed at a light wavelength of 658 nm, a detection angle of 175° (backscattering), and the temperature was set to 25 °C. Dh and the broadness of the intensity size distribution, called the polydispersity index (PDI), were derived from the intensity curve fitting by applying the autocorrelation function using Kalliope Software (Anton Paar GmbH).
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10

Characterizing Bacterial Zeta Potential and Size

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The cell zeta potential was measured in 0.02 μm filtered saline with gold electrode Omega cuvettes (Anton Paar, Graz, Austria). For DLS measurements, a 1:50 dilution of the standardized cultures in filtered saline was read in polystyrene cuvettes. The zeta potential and DLS were measured using Anton Paar Litesizer 500 and Kalliope software (Anton Paar, Graz, Austria). Zeta potential measurements used standard aqueous method settings. For particle size analysis, samples were equilibrated at room temperature in aqueous 154 mM NaCl (refractive index 1.3323), and material refractive index set at 1.388 for bacteria. For DLS and zeta potential experiments, n ≥ 8 biological replicates per subpopulation.
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