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7 protocols using citrate solution

1

Alkaline Phosphatase Activity Assay

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Fixative solution and ALP staining solution are required for the ALP assay. Fixative solution is a mixture of 25 ml citrate solution (Sigma), 65 ml acetone (Junsei Chemical, Tokyo, Japan) and 8 ml 37 % formaldehyde. To create the ALP staining solution, 1 ml sodium nitrite solution (Sigma) was mixed with 1 ml FBV solution (Sigma). After incubation at room temperature for 2 min, 45 ml DW and 1 ml naphthol As-BI alkaline solution (Sigma) were added to the mixture. For the ALP assay, the cells were fixed in fixative for 30 s and then incubated in ALP staining solution for 20 min in the dark.
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2

Scaffold Staining Protocol

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Scaffolds were washed with PBS, fixed for 30 s with Aceton-Citrate Solution (60% acetone, 40% 1:50 diluted Citrate Solution (Sigma)), and washed with ddH2O. Staining solution (Fast Violet B salt Grade B + Naphtol AS mix (Sigma)) was added to the scaffolds for 30 min at RT in the dark.
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3

NANOG Titration Assay Protocol

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For the NANOG titration experiment, cells were first seeded at a density of 3 × 104 cells/cm2 for 3 days at different dTAG-13 concentrations. The cells were then seeded at clonal density (500–1000 cells per well in a 6-well plate) and grown for 6 days, maintaining the same ligand concentrations and changing the medium every day. After 6 days, colonies were fixed for 30 s with Citrate-Acetone-Formaldehyde solution (25% Citrate solution (Sigma, #854), 67% Acetone (Merck, #67-64-1), 8% Formaldehyde (Sigma, #F8775)) and stained for 15 min with Alkaline Phosphatase staining kit (Sigma, #86R-1kt). The total number of colonies and the number of undifferentiated, mixed and differentiated colonies were counted using a stereomicroscope. Raw counts are given in Supplementary Data 2.
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4

TRAP Staining of Cell Cultures

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Tartrate resistant acid phosphatase (TRAP) staining was performed using a commercially available acid phosphatase kit from Sigma-Aldrich (Cat No. 387, Sigma Aldrich, Schnelldorf, Germany). The staining was performed according to the manufacturer's instructions. In detail, after aspiration of the culture medium, the cells were fixed with 100 μL fixative solution (3.316 mL acetone, 1.276 mL citrate solution (Sigma Aldrich, Schnelldorf, Germany), and 0.408 mL 37% formaldehyde) for 30 s. Thereafter the samples were washed twice with 200 μL PBS. Then, 100 μL of a freshly prepared diazotized Fast Garnet GBC Base Naphthol AS-BI phosphoric acid staining solution (Sigma Aldrich, Schnelldorf, Germany) was added to the wells followed by incubation at 37 °C and 5% CO2. After 60 min the staining solution was aspirated, the surfaces were washed twice with 200 μL dH2O and dried overnight at RT. The transmitted light microscope VisiScope IT 404 (VWR International, Leuven, Belgium) and the software ZEN 2.3 (blue edition) from Carl Zeiss Microscopy GmbH (Zeiss, Oberkochen, Germany) were used to analyze the PS reference. The scaffolds were analyzed with the SteREO Discovery.V20 stereomicroscope and the ZEN 2012 (blue edition) software (both Zeiss GmbH, Oberkochen, Germany).
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5

Coagulation Analysis Protocol with Citrate-Treated Blood

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For coagulation analyses, freshly collected blood was incubated with 1/10 v/v citrate solution (Sigma-Aldrich; Hamburg, Germany) to inhibit blood coagulation. Afterwards, the blood was centrifuged for 20 minutes at 600 xg, the obtained plasma was diluted ¼ with PBS, and used for blood coagulation assays, using a KC4 Delta Coagulometer (Tcoag; Bray, Ireland).
To determine the prothrombin time (PT), 50 μL plasma was incubated for 1 minute at 37°C. After adding 100 μL thromborel S (Siemens Healthcare; Marburg, Germany) the time until complete clotting of the sample occurred was measured.
For analyzing the partial thromboplastin time (aPTT), 50 μL plasma was incubated with 50 μL pathromtin SL (Siemens Healthcare; Marburg, Germany) for 5 minutes at 37°C. The reaction was started after adding 50 μL of a 0.025 M calcium chloride solution (Siemens Healthcare; Marburg, Germany). The time until complete clotting of the sample occurred was measured.
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6

Blood Collection Techniques for Mice

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After injecting a lethal dose of pentobarbital intraperitoneally (i.p.), intracardial blood was obtained for later analysis on the Sysmex XP Hematology Analyzer or HEMAVET using a syringe coated with citrate solution (Sigma) and a 26 G needle.
For smaller amounts of blood at multiple points in time, e.g., for analyzing erythrocyte turnover and stress erythropoiesis, mice were gently restrained, while blood was drawn by scratching the Vena caudalis mediana and immediately transferred to an EDTA-coated reaction vessel.
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7

Characterizing Immune Cell Populations

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Tail blood (20-30 μL) was collected 3 weeks post-hPBMC injection into 200 μL of citrate solution (Sigma-Aldrich), diluted with PBS and centrifuged (500 x g for 5 min). Spleens from euthanized mice at end-point were mechanically dissociated, filtered through 70 μm nylon filters (Falcon Biosciences, New York, NY, USA) and centrifuged (300 x g for 5 min). Blood and spleen cells were incubated with ammonium chloride potassium (ACK) lysis buffer (150 mM NH 4 Cl, 1 mM KHCO 3 , 0.1 mM Na 2 CO 3, pH 7.3) for 5 min and washed in PBS (300 x g for 5 min). Cells were then washed in PBS containing 2% foetal bovine serum (300 x g for 3 min), and incubated for 30 min with fluorochrome-conjugated mAb, including respective isotype controls. Cells were washed with PBS (300 x g for 3 min) and data was collected using a BD LSRII Flow Cytometer (using band pass filters 515/20 for FITC, 575/26 for PE, 675/40 for PerCP-Cy5.5, and 660/20 for APC). The relative percentages of cells were analyzed using FlowJo software v8.7.1 (TreeStar Inc., Ashland, OR, USA).
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