The ABI QuantStudio 7 Flex Real-Time Detection System is a laboratory instrument designed for real-time quantitative PCR (qPCR) analysis. It is capable of performing accurate and sensitive detection and quantification of nucleic acid targets.
Using the PrimeScript RT Reagent Kit (TaKaRa, Dalian, China) and the manufacturer's instructions, total RNA from the uterine tissues of birds at ZT2, ZT7, ZT12, ZT17, ZT22, and ZT27 (ZT3 in the normal group) was reverse transcribed into cDNA. qRT-PCR was carried out on the ABI QuantStudio 7 Flex Real-Time Detection System (Life Technologies, Carlsbad, CA) using the KAPA SYBR Fast universal qRT-PCR kit (TaKaRa, Dalian, China). Eight genes' relative expression levels were measured using the 2−ΔΔCt method, with GAPDH serving as a reference (Kenneth and Thomas, 2001 (link)). Table 1 lists the primer sequences.
List of primers used.
Table 1
Gene
Product size (bp)
Primer
Sequence (5′-3′)
CLOCK
121
F
GCTTCCAGGTAATGCTCGGAAG
R
CCAGTCCTGTCGAATCTCACTGG
PER2
115
F
CCAACTTTGTTGTGTGCTCCTTGC
R
CTGGAACAAACAGGTTGGTGTGTG
CA2
151
FR
CCCATCGCCATCAGCACCAAAGGCAGCACTGACTTGTCGGAGGA
CRY2
141
F
GCACGGCTGGATAAACACT
R
AAATAAGCGGCAGGACAAA
FBXL3
137
F
ATGTGTGGCGGTCGTCTCTCA
R
GTGGGCATCATGTCTGGGAACC
ATP2B1
198
F
CTCTTGCCTTGGCGACAGAACC
R
GCAGAGGTGCGTTTCTTCCACT
ITPR2
154
F
AACAGCACCAGCCTCCAGACA
R
TCCCACGGTTCTTCGCCACTT
PHLPP1
171
F
GCGGCATGGCTTCAGAGATCA
R
GGAAGGAGTTGGACAGGCAGAC
GAPDH
153
F
AGGACCAGGTTGTCTCCTGT
R
CCATCAAGTCCACAACACGG
Liu X., Shi L., Hao E., Chen X., Liu Z., Chen Y., Wang D., Huang C., Ai J., Wu M., Sun Y., Li Y., Xu L., Sun E., Chen J, & Chen H. (2024). Effects of 28 h ahemeral light cycle on production performance, egg quality, blood parameters, and uterine characteristics of hens during the late laying period. Poultry Science, 103(5), 103489.
Total RNA of the same sources and concentrations with library preparation was reverse transcribed into cDNA using PrimeScript RT Reagent Kit (TaKaRa, Japan) following the manufacturer's instruction. Quantitative RT-PCR was performed on ABI QuantStudio 7 Flex Real-time Detection System (Life Technologies Holdings Pte Ltd, USA). Each 10.0 μL PCR mixture contained 5 μL of SYBR Premix Ex Taq™ II, 0.5 μL (10 pM) of each primer, 0.2 μL of ROX Reference Dye II (50 × ), 1.5 μL of cDNA (100 ng), and 2.3 μL of ddH2O. Thermo cycling conditions consisted of an initial denaturing at 95°C for 3 min, for 40 cycles of amplification (95°C for 30 s and 60°C for 34 s), followed by thermal denaturing (95°C for 15 s, 60°C for 60 s, and 95°C for 15 s) to generate melting curves to verify amplification specificity. Pigeon β-Actin was used as an endogenous control. Relative quantifications of genes were calculated by 2−ΔΔCT method. The primers of randomly selected genes and lncRNAs were designed using Prime3 and NCBI Primer-Blast.
Yuan J., Ni A., Li Y., Bian S., Liu Y., Wang P., Shi L., Isa A.M., Ge P., Sun Y., Ma H, & Chen J. (2021). Transcriptome Analysis Revealed Potential Mechanisms of Resistance to Trichomoniasis gallinae Infection in Pigeon (Columba livia). Frontiers in Veterinary Science, 8, 672270.
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