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5 protocols using snai1

1

Protein Extraction and Western Blot Analysis

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RIPA lysis buffer (Thermo Fisher) with protease inhibitor (Sigma) was used to extract the total protein. The same amounts of total proteins were separated via SDS-PAGE gel and then transferred to polyvinylidene fluoride (PVDF, Millipore, Bedford, MA, USA) membranes. After blocking with 5% skim milk, the membranes were incubated with the primary antibodies[TRIM47 (Sigma); Twist, E-cadherin, N-cadherin, ZEB1, SNAI1, SLUG, and vimentin (Abcam); p53, P21, CDK4, CDK6, cyclin D1, p65, P-p65, and GAPDH (CST)] overnight at 4°C and then with the horseradish peroxidase-conjugated secondary antibody (Santa Cruz Biotechnology, CA, USA). Signals were detected with enhanced chemiluminescence system (Bio-Rad, Richmond, CA, USA).
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2

Immunoblotting Analysis of Epithelial-Mesenchymal Transition Markers

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Total protein was isolated from cells in RIPA lysis buffer on ice. Protein concentration was quantified using a Brad-ford Protein Assay kit (Bio-Rad Laboratories, Hercules, CA, USA). Proteins were boiled before being separated by electrophoresis on sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) gels and transferred onto nitrocellulose membranes (Pall Corp, Port Washington, NY, USA). The following primary antibodies were used in the immunoblotting assays: SNAI1 (ab117866; Abcam), E-cadherin (24E10, number 3195; Cell Signaling, Beverly, MA, USA), vimentin (C-20, sc-7557; Santa Cruz Biotechnology Inc, Dallas, USA, USA), and GAPDH (G8140; US Biological, Swampscott, MA, USA). Horseradish peroxidase–conjugated secondary antibodies (Bio-Rad Laboratories) were used at a 1:1000–1:5000 dilution and detected using Western Blotting Luminol Reagent (sc-2048; Santa Cruz Biotechnology Inc), as described in our previous study.20 (link)
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3

FBXO11 Mutant Lung Development Analysis

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Paraffin embedded 4 μm thick lung sections from wild type and FBXO11 mutant littermates were stained for H&E. Fresh frozen wild type and FBXO11 mutant littermates at E18.5 were stained for below mentioned antibodies with acetone fixation. Antibodies against Snai2, N-cadherin, β-catenin, p63 (Cell Signaling, Billerica, MA) and Snai1 (Abcam, Cambridge, MA) were used at 1:100 dilution; anti-E-cadherin (Cell Signaling, Billerica, MA) antibody was used at 1:400 dilution.
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4

Western Blot Analysis of Signaling Proteins

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Total proteins were extracted from cells with RIPA buffer (Sigma Aldrich), separated by SDS‐PAGE gels and transferred to polyvinylidene difluoride (PVDF) membrane (Millipore). The membranes were blocked with 5% nonfat milk and incubated with primary antibodies (β‐CATENIN, AKT, pAKT, mTOR, pmTOR, MEK, pMEK (Cell Signaling Technology), MMP2, SNAI1 (Abcam, Cambridge, UK), IL32, TWIST1, GAPDH (Proteintech) overnight at 4°C, followed by incubation with secondary antibodies for 1 hour at room temperature. The immunoreactive protein bands were detected by ECL detection system. GAPDH was used as a loading control.
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5

Western Blot Analysis of EMT Markers

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Treated cells were lysed with radioimmunoprecipitation assay (RIPA) lysis buffer (KenGen, China), and protein concentrations were quantified using a BCA Protein Assay Kit (Beyotime, China). Total protein lysates were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred to polyvinylidene difluoride (PVDF) membranes (Millipore, USA). The membranes were blocked in 5% non-fat milk and incubated with primary antibodies against SP1 (1:1000; Bioworld Technology, USA), SNAI1, CDH1, CDH2, VIM and matrix metalloproteinase-2 (MMP-2; 1:1000 each; all from Abcam, USA), followed by incubation with horseradish peroxidase (HRP)-conjugated secondary antibody (1:2000; Santa Cruz Biotechnology, USA). GAPDH served as a loading control (1:5000; Bioworld Technology, USA).
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