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3 protocols using clone rm3 1

1

Immunophenotyping of Dissociated Cells

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Cells were dissociated into single cells with 0.05% trypsin (0.1% EDTA) wherever suitable or rinsed off from culture, and resuspended in a FACS washing buffer (PBS with 5% fetal calf serum (FCS) and 2.5 mM EDTA). The cell suspension was then stained with the desired antibodies. The antibodies used in this study were: CD56 (1:50, clone CMSSB; eBioscience), PE-conjugated CD309 (FLK1, 1:50, clone 7D4–6; Biolegend), PE-conjugated CD13(1:50, clone WM15; BD), FITC-conjugated CD31 (1:50, clone WM59; BD), APC-conjugated CD34 (1:50, clone 581; BD), FITC-conjugated CD43 (1:50, clone MEM-59; Biolegend), PE-conjugated CD43 (1:20, clone eBio84-3C1; eBioscience), FITC-conjugated CD45(1:50, clone 5B1; Miltenyi Biotec), FITC-conjugated CD14 (1:50, clone HCD14; Biolegend), PE-conjugated CD68 (1:50, clone Y1/82A; Biolegend), APC-conjugated CD11b (1:50, clone ICRF44; Biolegend), PE-conjugated CD163 (1:50, clone RM3/1; Biolegend), PE-conjugated CD73 (1:50, clone AD2; Biolegend) and APC/Cy7-conjugated CD163 (1:50, clone 12G5; Biolegend). FITC-conjugated mouse IgG2a (1:20, 130-098-846; Miltenyi Biotec), APC-conjugated mouse IgG1 (1:20, 130-098-877; Miltenyi Biotec) and PE-conjugated mouse IgG1κ (1:20, clone P3.6.2.8.1; eBioscience) were used as isotype-matched negative controls. Data were collected with a FACS Calibur flow cytometer (BD) and analyzed using FlowJo software, version 10.0.7.
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2

Polarizing and Characterizing Macrophages

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MDMs were cultured in 12-well plates and exposed to an M1 polarization stimulus using E. coli lipopolysaccharide (LPS) (Sigma, 20 ng/ml) plus recombinant human interferon (rh-IFN)-γ (Fisher, 20 ng/ml) and into M2a using rhIL-4 (20 ng/ml) for 48 h per prior methods (2 (link), 27 (link)). Resident cells without any stimulation were used for baseline comparison. Aliquots incubated in human Fc-γ Block (Biolegend, 422301) for 30 min on ice and then stained using phycoerythrin (PE) anti-human CD80 (Biolegend, 305208, Clone 2D10) and phycoerythrin cyanine tandem conjugate (PE/Cy7) anti-human CD11b (Biolegend, 101216, Clone M1/70) or allophycocyanine (APC) anti-human CD163 (Biolegend, 326510, Clone RM3/1) and allophycocyanin cyanine 7 tandem conjugate (APC/Cy7) anti-human CD206 (Biolegend, 321120, Clone 15-2). Next, FITC anti-human CD68 (Biolegend, 333806, Clone Y1/82A) intracellular staining was performed post-fixation and permeabilization according to the manufacture's recommendations. Stained cells were gated via viable CD11b+subsets and identified by CD68CD80 (M1) and CD163CD206 (M2) markers using FlowJo (Tree Star).
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3

Macrophage Secretome Characterization

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The amount of IL-6 and IL-10 (ELISA MAX™ Standard Set Human, Biolegend), as well as the concentration of human vascular endothelial growth factor (VEGF, Abcam) in the supernatants was assessed by ELISA quantification assay. For that, supernatants (500 µL) of cell culture media of macrophages and liquefied capsules (n=5 per well) were stored at -80ºC until analysis. Protein detection was performed according to each manufacture's specifications. Ultimately, the measurements were read at 450 nm in a microplate reader (Gen 5, Synergy HT, Biotek), and normalized with dsDNA quantification data.
Flow cytometry analysis: For the analysis of the surface markers, macrophages were detached from the well-plate by incubation with TrypLE TM Express solution (Life Technologies) at 37 ºC for 5 min. Then, cells were incubated with Alexa Fluor ® 647 anti-human CD163 antibody (5 µL of antibody per 1x10 6 of cells, clone RM3/1, Biolegend), Alexa Fluor ® 488 anti-human CD80 antibody (5 µL of antibody per 1x10 6 of cells, clone 2D10, Biolegend), and PE antihuman CD36 antibody for 45 min at 4 ºC and in the dark. Samples were acquired on a BD Accuri TM C6 Plus flow cytometer (BD Biosciences). All data were analysed using FlowJo TM Software (version 10, Ashland).
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