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5 protocols using newborn calf serum

1

Pancreas and Cell RNA Isolation

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For cultured cells, the purified total RNA was obtained from GFP-negative cells as described above. For RNA isolation from murine pancreas, pancreas was cut into small pieces using scissors and incubated in 2 mg ml−1 collagenase (Wako) in the RPMI1640 medium (Sigma-Aldrich) containing 2% (vol/vol) new-born calf serum (Equitech-Bio) for 30 min at 37 °C with stirring. The cell suspensions were filtered through cell strainers (pore size, 70 µm; BD Biosciences) and used for gene expression analysis. The total RNA was extracted from the isolated cells using TRIzol and an RNeasy Mini Kit (QIAGEN) and reverse-transcribed using a QuantiTect Reverse Transcription Kit (QIAGEN). GeneAce SYBR qPCR Mix (NIPPON GENE) was used to perform qPCR using the StepOne system (Thermo Fisher Scientific). The primer sequences used are listed in Supplementary Table 1. We used GAPDH or RPL13A as a reference gene to normalize data.
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2

Rat Islet Isolation and Culture

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Sprague-Dawley rats (Envigo Harlan, Houston, TX, USA) were used as the islet donor. Islet isolation was done using standard collagenase digestion and gradient purification5 (link). After isolation, the islets were cultured in CMRL-1066 (Mediatech, Manassas, VA, USA) supplemented with 10% newborn calf serum (Equitech Bio, Kerrville, TX, USA) and 1% penicillin/streptomycin (Fisher Scientific, Hampton, NH, USA) in a 37°C 5% CO2 incubator.
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3

Bladder Cancer Cell Line Cultivation

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The present study was performed using five human bladder cancer cell lines: T24 (grade 3), KK47 (grade 1), 5637 (grade 2), 1376 (grade 3) and RT4 (grade 1). The T24, 5637, 1376 and RT4 cell lines were obtained from the American Type Culture Collection (Manassas, VA, USA), and KK47 was generously provided by Dr Naito (Kyushu University, Fukuoka, Japan). The T24 and KK47 cells were cultured in minimum essential medium (MEM) with Earle’s salts, L-glutamine (Invitrogen, Carlsbad, CA, USA), 10% newborn calf serum (Equitech-Bio, Inc., Kerrville, TX, USA) and 1% penicillin (PC) streptomycin (SM; Gibco, Grand Island, NY, USA). The 5637 and 1376 cells were incubated in RPMI-1640 medium supplemented with 1% L-glutamine (Invitrogen), 10% fetal bovine serum (FBS; Nichirei Biosciences Inc., Tokyo, Japan), 1% HEPES (Gibco) and 1% PCSM. The RT4 cells were grown in modified McCoy’s 5A medium (Gibco), supplemented with 10% FBS and 1% PCSM. All cell lines were maintained in a humidified incubator at 37°C and 5% CO2.
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4

Flow Cytometry Analysis of Cardiac Macrophages

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Flow cytometry analysis was performed as reported with modifications59 (link). Briefly, the upper side of the heart, containing aortic valve was isolated and cut into small pieces by using scissors and incubated for 30 min at 37 °C with stirring in RPMI1640 medium (Sigma-Aldrich) containing 2% (vol/vol) newborn calf serum (Equitech Bio) and 0.5 mg/mL collagenase (Wako Chemicals). Cell suspensions were filtered through cell strainers (70 μm; BD Bioscience), and stained with following mAbs: PE-Cy7 anti-mouse F4/80 (BioLegend; 1:100), APC-Cy7 anti-mouse CD11b (BioLegend; 1:100) and BV421 anti-mouse CD4 (BioLegend; 1:100) to detect macrophages. Anti-CD16/32 mAb (BioLegend; 1:100) and 7-AAD (BioLegend; 1:100) were used to prevent nonspecific staining and detect dead cells, respectively. Samples were analyzed by FACSAria II (BD Bioscience). Data were analyzed by using FlowJo 9.9 (Tree Star).
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5

Culturing Human Prostate Cancer Cell Lines

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The LNCaP, PC-3, DU145 and 22Rv1 human prostate cancer cell lines were purchased from the American Type Culture Collection (ATCC; Rockville, MD, USA). These cells were cultured at 37°C in a humidified incubator containing 5% CO2 and 95% air. LNCaP, DU145 and 22Rv1 cells were cultured in RPMI-1640 (Sigma-Aldrich Corp. St. Louis, MO, USA) supplemented with 15% fetal bovine serum (Sigma-Aldrich Corp.), 50 μg/ml streptomycin and 50 IU/ml penicillin (Gibco, Grand Island, NY, USA). PC-3 cells were cultured in RPMI-1640 supplemented with 10% newborn calf serum (Equitech-Bio Inc., Kerrville, TX, USA), 50 μg/ml streptomycin and 50 IU/ml penicillin.
For androgen [dihydrotestosterone (DHT)] ablation, an androgen-independent prostate cancer cell line model LNCaP/AI was cultured in phenol red free RPMI-1640 (Sigma-Aldrich Corp.) supplemented with 15% charcoal/dextran-treated fetal bovine serum (HyClone, Logan, UT, USA), 50 μg/ml streptomycin and 50 IU/ml penicillin for 3 months.
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