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Ion max

Manufactured by Thermo Fisher Scientific
Sourced in United States, Germany

The Ion Max is a high-performance mass spectrometer ion source from Thermo Fisher Scientific. It is designed to provide efficient and reliable sample ionization for a variety of analytical applications. The Ion Max utilizes an electrospray ionization (ESI) technique to generate ions from liquid samples, enabling the analysis of a wide range of analytes. Its core function is to convert sample molecules into gaseous ions that can be detected and analyzed by a mass spectrometer.

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11 protocols using ion max

1

Mass Spectrometry of Denatured and Native Antibodies

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For denatured antibody analysis, samples were analyzed by a Q Exactive (QE) Plus mass spectrometer (Thermo Fisher Scientific) coupled to an Ion Max source (Thermo Fisher Scientific) fitted with a HESI II probe with a flow rate of 25–200 μL/min. Mass spectra were acquired at a resolution setting of 17,500 with a scan range from m/z 1,600 to 6,000 and settings including a spray voltage of 3.7 kV, a sheath-gas flow rate of 7, an in-source collision-induced-dissociation (SID) value of 20 eV, and a capillary temperature of 320 °C. For native antibody analysis, samples were analyzed by a QE UHMR mass spectrometer (Thermo Fisher Scientific) coupled to an Ion Max source fitted with a HESI II probe with a flow rate of 100 μL/min. Mass spectra were acquired at a resolution setting of 12,500 with a scan range from m/z 2,500 to 15,000 and settings including a spray voltage of 4.3 kV, a sheath-gas flow rate of 20, and a capillary temperature of 275 °C. Ion transfer optics throughout the instrument and in-source trapping fragmentation voltage were tuned for every sample specifically. For the noncovalent antibody complex, 125 °C of probe heater temperature was applied. Mass spectra were viewed in Thermo Xcalibur Qual Browser software (Thermo Fisher Scientific).
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2

LC-MS Column Evaluation Protocols

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Mass spectrometry for the LC column evaluation was performed on an Exactive mass spectrometer in full scan mode with an m/z range of 60 to 1,000 in both the positive and negative ESI modes at a resolution setting of 50,000 (m/z 200). All other studies were performed on a Q Exactive mass spectrometer in full scan mode with an m/z range of 67 to 1,000 in both the positive and negative ion modes at a resolution setting of 70,000 (m/z 200). All additional ESI source parameters are further described in the supplementary materials. Experiments were performed with a Thermo Scientific Ion Max source with a HESI-II probe (Thermo Fisher Scientific, San Jose, CA). A 32-gauge stainless steel needle was used for all analytical flow experiments, and a 34-gauge stainless steel needle was used for all microflow experiments.
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3

Quantifying Sugar Nucleotides by Mass Spectrometry

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Mass spectrometry was conducted by parallel reaction monitoring on a Thermo Scientific™ Q Exactive™ Hybrid Quadrupole‐Orbitrap™ mass spectrometer equipped with a Thermo Scientific™ Ion Max™ ion source with a heated electrospray ionization (HESI) probe, both from Thermo Fisher Scientific (Bremen, Germany). The source heater temperature was set to 250°C, spray voltage to −4.0 kV, sheath gas flow to 35 arbitrary units, auxiliary gas flow of 5 arbitrary units, capillary temperature to 350°C, and S‐lens RF level to 60.0. The m/z values set on the inclusion list were 535.060 (UDP‐xylose and UDP‐arabinose), 565.050 (UDP‐Glc and UDP‐Gal), 579.050 (UDP‐glucuronate and UDP‐galacturonate) and 482.980 (UTP) with an isolation window of 1.0 m/z. The resolution was set to 17 500 at m/z 200, the automatic gain control target was set to 1e6 charges with a maximum injection time of 150 msec, higher‐energy collisional dissociation was done with a collision energy of 23 eV.
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4

LC-MS Analysis of Complex Samples

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The analysis was carried out using a Thermo Scientific HRAM LC-MS system (Thermo Scientific, MA, USA) consisting of an “Accela” liquid chromatograph with diode array detector and an “LTQ-Orbitrap XL” hybrid linear ion trap-orbitrap mass spectrometer. Chromatography was performed on a 150 × 3 mm, 3 μm Phenomenex Luna C18 column using a 400 μL/min flow rate. The separation was obtained using the following linear mobile phase gradient: 0 min: 90% A, 0% B, 10% C; 50 min: 0% A, 90% B, 10% C, 55 min: 0% A, 90% B, 10% C, 57 min: 90% A, 0% B, 10% C, 60 min 90% A, 0% B, 10% C (A: water, B: methanol, C: acetontirile containing 1% formic acid). The injection volume was 5 μL. Ammonia solution was added post column at a flow rate of 0.1 μL/min. The mass spectrometer was fitted with an electrospray source (Thermo “Ion Max”) operated in positive mode at a source voltage of 3.5 kV using sheath and auxiliary nitrogen flow rates of 60 and 20 units, respectively, and a capillary temperature of 300°C. High resolution MS1 scanning was performed in the orbitrap (m/z 250–2000; resolution 30,000). Low resolution data dependent MS2 scans were undertaken in the linear ion trap (isolation width 4 m/z units; collision energy 35%).
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5

Compound Detection using Q Exactive-Orbitrap

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Compounds were detected on a Thermo Scientific Q Exactive-Orbitrap mass spectrometer equipped with a Thermo Scientific Ion Max source and a heated electrospray (HESI-II) source. Data were acquired in parallel-reaction monitoring (PRM) mode, where a single precursor ion was selected in the quadrupole as a mass filter with an isolation width of 2.0 m/z to improve precursor selection and ion transmission and fragmented in the HCD cell using optimized compound-specific collision energy. The resulting MS/MS product ion spectrum was detected in the Orbitrap detector at a resolution of 35,000 (FWHM at m/z of 200).
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6

UHPLC-Orbitrap MS analysis protocol

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LC-MS analysis was performed using similar but not identical UHPLC systems coupled to Orbitrap-based mass analysers operated with the Thermo Scientific™ Ion Max™ source equipped with the HESI-II-probe (see Electronic Supplementary Material (ESM) Table S1). All data were acquired using Thermo Scientific™ Chromeleon™ Chromatography Data System (CDS) software 7.2.9 (Thermo Fisher Scientific).
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7

UPLC-HRMS Analysis of Saffron Samples

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A quality control sample (QC) taken from all samples was prepared in order to periodically assess the reproducibility of the measurements. The separation of the analytes contained in the saffron samples was achieved with a Fortis UPLC C18 column (2.1 mm × 100 mm, 1.7 µm, Fortis Technologies Ltd., Cheshire, UK). The hyphenated LC-HRMS system comprised of an Accela UHPLC equipped with an autosampler, a vacuum degasser, a binary pump and a temperature-controlled column (Thermo Scientific, Germany) coupled to an Orbitrap Discovery XL, which was equipped with an IonMAX ion source (Thermo Scientific, Bremen, Germany). The mobile phase consisted of 0.1% aq. formic acid (v/v) (solvent A) and 0.1% formic acid in LC–MS grade ACN (v/v) (solvent B). The gradient program was for solvent B: 5% at 0 min, 5% at 3 min, 95% at 24 min, 95% at 26 min, 5% at 28 min, 5% at 30 min. The overall analysis time spanned for 30 min, whereas the injection volume was 5 µl keeping a flow rate of 400 µl min−1. The positive ionization ESI mode was used using a mass range of 100–1000 amu. The “big three” approach, employing parallel scans, was used. The samples were centrifuged using a Mikro 200R centrifuge (Hettich Lab Technology, Tuttlingen, Germany), and for the solvent evaporation was performed on a GeneVac HT-4X EZ-2 series evaporator Lyospeed ENABLED (Genevac Ltd., Ipswich, UK).
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8

Comprehensive LC-ESIMS Analysis of M. edulis

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Extracts of M. edulis (50 mg ml-1, in methanol for 24 h) were analyzed by LC-ESIMS using an LTQ Orbitrap XL, linear ion trap/orbitrap hybrid mass spectrometer (Thermo Scientific, San Jose, CA, United States) with an electrospray ionization source (Ion Max, Thermo Scientific) coupled to an Acella 1250 uPLC system (Thermo Scientific). Samples were injected onto a Phenomenex Luna C18(2) column (150 × 3 mm i.d., 3 μm particle size) and eluted at 400 μL min-1 using a linear gradient as described previously (Green et al., 2017 (link)) and compounds eluted using MeOH (A), H2O (B), and formic Acid (C) with A = 0%, B = 90% at T = 0 min; A = 90%, B = 0% at T = 20 min and held for 10 min with C at 10% throughout the analyses. Column temperature was 30°C with flow rate = 0.5 ml min-1. Samples were scanned, using FTMS, from m/z 125–1250 in both positive and negative modes.
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9

Lipid Profiling by ESI-MS/MS

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ESI/MS analyses were performed on a Thermo Scientific triple stage quadrupole Vantage EMR mass spectrometer with Xcalibur operating system. Lipid extracts (10 μl each injection) were injected to the HESI-II probe in a Thermo Scientific Ion Max ion source by a built-in syringe pump, which delivered a constant flow of methanol at 20 μl/min. The mass spectrometer was tuned to unit mass resolution, and the heated capillary temperature was set to 280 °C. The electrospray needle was set at 4.0 kV and 3.5 kV for positive-ion and negative-ion modes operation, respectively, and the skimmer was at ground potential. The mass resolution of both Q1 and Q3 was set at 0.6 Da at half peak height to obtain the product ion scan, precursor ion scan, and neutral loss scan mass spectra, using a collision energy of 30 to 40 eV with target gas of Ar (1.3 mtorr) in the rf-only second quadrupole (Q2). The mass spectra were accumulated in the profile mode. Significant peaks were assigned based on signal to noise ratio to assess significance or quantitation (43 ) and evaluated for natural isotope patterns (44 ).
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10

UPLC-APPI-MS Analysis of Compounds

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The instrumental method had been developed in a previous study (Sanchís et al., 2018) . Briefly, 20 μL of extract were injected in each run into an Acquity UPLC System (Waters, Milford, USA) equipped with a COSMOSIL™ Buckyprep column (150 × 2.0 mm; 5 μm particle size) from Nacalai Tesque Inc. (Kyoto, Japan). A mixture of toluene:methanol (9:1) flowing at 0.4 mL/min was employed as mobile phase. Mass spectrometric analyses were carried out with a Q Exactive™ (Thermo Fischer Scientific, San Jose, USA). The ionisation was performed with an Ion Max source (Thermo Fischer Scientific, San Jose, USA) working in APPI mode and negative polarity. Sheath gas and auxiliary gas were set at 40 a.u. and 25 a.u.; the capillary and probe heater temperatures, were set at 300 °C and 400 °C; S-lens RF were set at 90%. Full scans were acquired from m/z = 300 to 1600 with a resolution of 140,000 full width at half maximum.
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