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178 protocols using formyl methionyl leucyl phenylalanine (fmlp)

1

Quantifying Neutrophil Extracellular Trap Release

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1 × 105 neutrophils were seeded into each well of a 96-well black plate (FIA – plate, Greiner). Cells were stained with 1 εM SYTOX green (S7020, Thermo Fisher Scientific), a fluorescent dye that is impermeant to live cells and has a high-affinity to nucleic acid. Subsequently, cells were allowed to settle for 20 minutes and then stimulated with either 100 nM PMA (79346, Sigma-Aldrich), 1 εM fMLP (F3506, Sigma-Aldrich), or 4 εM CaI (C7522, Sigma-Aldrich) or respective mix of agents (PMA and fMLP; PMA and CaI; fMLP and CaI; fMLP, CaI, and PMA). The fluorescence of NET-bound SYTOX green (excitation λ: 488 nm, emission λ: 510 nm) was measured every 30 minutes for a period of three hours at 37°C using a FLUOstar® Omega multi-mode microplate reader (BMG Labtech, Ortenberg, Germany) and Omega Data Analysis software. DNA release values are presented as the relative fluorescence units (RFU), which reflect the free DNA concentration.
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2

Priming Devices for Fungal-Neutrophil Interactions

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One day prior to the experiment, devices were primed with Iscove’s Modified Dulbeco’s Medium (IMDM) with 20% fetal bovine serum (FBS) by loading the device with a gel-loading tip, inner port first followed by outer ports, such that media formed a dome on top of the device covering all three loading ports. Devices were subjected to vacuum for 10 mins, then allowed to re-pressurize for at least 20 mins, or until all air bubbles within the device were gone. The entire device was then submerged in media (2 mL per well in 12 well plate), and 0.5 μL of conidia (at 5 x 107 conidia/mL) loaded into the central port using a gel-loading tip, with care taken not to pipette into the surrounding media. Loaded devices were then incubated overnight, allowing germination of conidia and growth of hyphae into the outer chambers and interaction channels.
Once hyphae began to enter the interaction channels, neutrophils were delivered through the loading port and into the outer channels.
For N-formyl-Met-Leu-Phe (fMLP) experiments, fMLP (Sigma) at 100nM was delivered through the central loading port.
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3

Quantifying LTB4 Release in Infected PMN

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Prior to the induction of LTB4 release, the cells were resuspended in FCS-free complete medium. Infected and noninfected PMN as well as pathogen controls (L. major promastigotes or cell-free A. phagocytophilum without neutrophils) were exposed to either the combination of LPS and fMLP (1 μg/ml LPS for 30 min followed by 0.5 μM fMLP 10 min; both Sigma-Aldrich) or ionomycin (0.2 μM, 10 min, Sigma-Aldrich). Control samples were left untreated. The induction was carried out in a 37°C water bath and terminated by cold centrifugation (4°C, precooled, 800 ×g, 10 min). The supernatants were collected and stored at −80°C. LTB4 was finally quantified by competitive enzyme-linked immunosorbent assay (R&D Systems, Minneapolis, MN, USA) according to the manufacturer's instructions.
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4

Modulating Neutrophil Activation Pathways

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PMNs from healthy donors were isolated on a Histopaque gradient.
5×105 cells/ml were cultured for 12 hrs with 10 ng/ml of
GM-CSF in the presence of dithiothreitol (DTT) (0.5, 1, 2 mM; Sigma),
tunicamycin (0.5, 1, and 2 µg/ml; Sigma-Aldrich), or thapsigargin (0.5,
1, and 2 µM; Sigma). In some instances, 20 µM of the XBP-1
inhibitor B-IO9 was added 3 hours prior to culture. Cells were then stained for
flow cytometry or used for functional assays as described above. For fMLP and
PMA stimulation, PMN were isolated from healthy donors and cultured for 1 or 18
hours with either 10 nM fMLP (Sigma Alrich) or 20 nM PMA (Sigma Aldrich). Cells
were then washed and LOX1 expression was measured by flow cytometry or used for
functional assays as described above. For overnight cultures, 10 ng/ml of GM-CSF
was added to the culture.
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5

Immunoblotting of Activated Kinases

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Eugenol, Hank’s Balanced Salt Solution (HBSS), Phosphate Buffered Saline (PBS), Phorbolmyrisate acetate (PMA), formyl-methionyl-leucyl-phenylalanine (fMLF), mouse monoclonal anti-β-actin antibody, phosphatase and proteases inhibitors were from Sigma Aldrich (Saint Quentin Falavier, France). Dextran T500 and Ficoll were purchased from GE healthcare (Orsay, France). SDS-PAGE and western blot reagents were from Bio-Rad Laboratories (Hercules, CA, USA). Anti-phospho-Raf, Anti-phospho-MEK1/2, Anti-phospho-p38 and Anti-phospho-ERK 1/2 antibodies were from cell signaling Technology (Boston, MA, USA). The anti-phospho-p47phox antibodies (Ser-328 and Ser-345) were generated by our lab as previously described35 (link). HRP-conjugated goat anti-rabbit, HRP-conjugated goat anti-mouse, AP-conjugated goat anti-rabbit antibodies and ECL (enhanced chemiluminescence) reagent were from Santa Cruz Biotechnology Inc (Heidelberg, Germany).
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6

Neutrophil-Stromal Cell Coculture Assay

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Due to the cornea harboring very low numbers of stromal cells and neutrophils, these cells were isolated from bone marrow for our in vitro experiments. Neutrophils were isolated from bone marrow of C57BL/6 mice using a neutrophil isolation kit (purity ≥ 95%) (MACS; Miltenyi Biotec, Inc., San Diego, CA, USA).17 (link),18 (link) Purified neutrophils were cultured alone or stimulated with fMLP (formyl-methionyl-leucyl-phenylalanine, 1 μM; Sigma-Aldrich Corp.) for 1 hour.19 ,20 (link) Bone marrow–derived mesenchymal stromal cells (stromal cells) were generated by culturing bone marrow cells using the plastic adherence method and characterized as described previously.11 (link),12 (link) Stromal cells were passaged every 3 to 5 days and were used for experiments at passage three. Stromal cells were stimulated with IL-1β (100 ng/mL; Biolegend, San Diego, CA, USA) for 24 hours.12 (link) For coculture assays, neutrophils were cultured alone or on stromal cell monolayer at the ratio of 1:1 for 1 hour. For TSG-6 neutralization experiments, cocultures were pretreated with a standard maximal concentration (10 μg/mL) of anti-TSG-6 antibody (AF2326; R&D Systems, Minneapolis, MN, USA) for 1 hour and were then stimulated with fMLP for an additional 1 hour. Two mice were used in each experiment, and each experiment was repeated three times.
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7

Basophil Activation Test Protocol

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The BAT was performed, as previously described.14 (link) Heparinized whole blood was stimulated for 30 minutes at 37°C with PE (ALK-Abelló) diluted in RPMI medium at serial 10-fold dilutions from 10 μg/mL to 0.1 ng/mL. Polyclonal goat anti-human IgE (Sigma-Aldrich, St Louis, Mo), monoclonal mouse anti-human FcεRI (eBioscience, San Diego, Calif), formyl-methionyl-leucyl-phenylalanine (Sigma-Aldrich), or RPMI alone were used as controls. Cells were stained with CD123–fluorescein isothiocyanate (eBioscience), CD203c-phycoerythrin, HLA-DR–peridinin-chlorophyll-protein complex, and CD63-allophycocyanin (BioLegend, San Diego, Calif), and erythrocytes were lysed. Basophils were gated as low side scatter/CD203c+/CD123+/HLA-DR. Basophil expression of CD63 and CD203c was evaluated with the FACSCanto II with FACSDiva software (BD Biosciences, San Jose, Calif). Data were analyzed with FlowJo software, version 7.6.1 (TreeStar, Ashland, Ore).
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8

Monocyte Chemotaxis Assay

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WT and RP105−/− bone marrow-derived monocytes (105 cells per well) were applied in quadruplicate to the upper chamber of a transwell system (24 wells, 8 µm pore size, PAA) in RPMI supplemented with 0.05% BSA (Sigma-Aldrich) and PBS or LPS in PBS (10 ng/ml) was added. Monocyte chemotaxis was assessed towards 100 nM FMLP (formyl-methionyl-leucyl-phenylalanine, Sigma-Aldrich) in the basolateral chamber. After 2 hours of incubation the number of monocytes migrated to the basolateral chamber was counted manually.
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9

Quantifying Neutrophil Chemotaxis

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Chemotaxis was measured using a transwell chamber with 6.5 mm diameter polycarbonate filters (3 µm pore size; Corning, Tewksbury, MA). Immediately after isolation, cells were incubated in RPMI 1640 supplemented with FCS in the absence or presence of EtOH (6.25 and 12.5 mM correspond to 3 and 6% of EtOH in human blood, respectively) for 2 h. Then, cells were transferred to RPMI 1640 supplemented with FCS, cultivated on filters and allowed to migrate toward the chemo attractant fMLF (formyl-methionyl-leucyl-phenylalanine, 10−6 M; Sigma) or medium alone at 37°C, 5% CO2. After 1 h, the filters were removed, and the cells that migrated through the membrane were fixed, stained and counted using light microscopy.
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10

Neutrophil Activation and Sdc1 Quantification

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Peripheral blood was drawn from healthy human volunteers and heparinized, after which isolation was performed. 13 (link) In brief, after sedimentation in dextran solution (45 mg/mL), the supernatant was placed over Histopaque 1077 (Sigma) for density gradient centrifugation. Remaining red blood cells were eliminated by hypotonic lysis and the pellet was resuspended in HBSS containing 0.25% BSA. Cells were counted and 0.5 million cells per well were seeded in a 24 well plate. The cells were allowed to adhere and were activated with PMA (phorbol myristate acetate; 100 nmol/L, Sigma) and fMLP (formyl-methionyl-leucyl-phenylalanine; 1 μmol/L, Sigma) in combination with polylysine treatment for 20 minutes on a shaker. The supernatant was further used for quantification of Sdc1 using a human Sdc1 ELISA kit (Diaclone number 950.640.048).
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