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248 protocols using ab13847

1

Protein Expression Analysis by Western Blot

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Total protein was extracted from cells using M-PER buffer solution (Pierce Biotechnology Inc., Rockford, IL, USA) containing protease inhibitor (Roche, Basel, Switzerland) and Nonidet-P40. The protein concentration was then determined by the modified Coomassie protein assay (Bradford method). Then 50–80 μg of protein was separated using 10% polyacrylamide gel electrophoresis and transferred onto a polyvinylidene fluoride membrane. Next, the membrane was treated with 5–10% skim milk powder or 5% bovine serum albumin (BSA) followed by overnight incubation with primary antibodies against Bcl-2-associated X protein (Bax) (1:1,000, sc-7480), B-cell lymphoma 2 (Bcl-2) (1:1,000, sc-7382), YY1 (1:1,000, sc-7341), telomerase reverse transcriptase (TERT) (1:1,000, sc-393013), p53 (1:1,000, sc-126), p300 (1:2,000, sc-48343), GAPDH (1:1,000, sc-47724), caspase-3 (1:500, ab13847), and cleaved caspase-3 (1:500, ab13847) [all from Abcam Inc. (Cambridge, UK) except GAPDH which was from Santa Cruz Biotechnology, Inc (Santa Cruz, CA, USA)]. The following day, the membrane was re-probed with horseradish peroxidase-labeled secondary antibody for 1 h after Tris-buffered saline Tween-20 (TBST) washing. Afterwards, the membrane was visualized using enhanced chemiluminescence (ECL) reagents (Pierce), and the protein bands were quantified by Image Lab 3.0 software (Bio-Rad, Inc., Hercules, CA, USA).
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2

Immunohistochemical Apoptosis Evaluation

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Culture medium was removed, and cells were washed thrice with PBS. After 0.1% Triton X-100 and 3% H2O2 treatment, cells were incubated in rabbit polyclonal anti-Caspase-3 antibody (ab13847, Abcam, UK) at 4 °C overnight and anti-rabbit universal immunoassay kit (GeneTech, China) at 37 °C for 30 min. The cells were counted in five random fields per well. For BMSCs grafts evaluation, rats were sacrificed at 7 days after transplantation and the femoral trochlea were harvested. Frozen sections were stained by anti-Caspase-3 antibody (ab13847, Abcam, UK) at 4 °C overnight, and anti-rabbit immunoassay kit (GeneTech, China) at 37 °C for 1 h. Each frozen section was counted in five random fields.
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3

Comprehensive Protein Analysis by Western Blot

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Western blot analysis was conducted as previously described [27 (link)]. The primary antibodies against proliferating cell nuclear antigen (PCNA; ab29; 1:1000), total-caspase 3 (ab13847; 1:500), cleaved-caspase-3 (C-caspase 3; ab13847; 1:1000), N-cadherin (ab202030; 1:1000), Vimentin (ab193555; 1:1000), E-cadherin (ab1416; 1:1000), FHL2 (ab12327; 1:1000) and GAPDH (ab8245; 1:1000), and the secondary antibodies, horseradish peroxidase (HRP) conjugated goat anti-rabbit (ab205718; 1:5000) and goat anti-mouse (ab205719; 1:5000), were purchased from Abcam (Cambridge, MA, USA).
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4

Investigating ER Stress-Induced Apoptosis Signaling

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Cells were lysed by RIPA lysis (P0013B, Beyotime, China) supplied with PMSF and the lysates were quantitated by Bio-Rad DC Protein Assay kit (Ewell, China). The protein sample was separated using freshly-prepared SDS-PAGE, electrotransferred onto PVDF membranes, and probed with primary antibodies. After that, the membranes were re-probed with goat anti-rabbit IgG (1:10,000, ab6721, Abcam). Immunoblots were visualized with enhanced chemiluminescence detection reagents and captured under the SmartView Pro 2000 (UVCI-2100, Major Science, USA) microscope. Gray value of target protein bands was quantified using Image J software, with GAPDH used for normalization. Primary antibodies used: GRP78 (Abcam, ab21685, rabbit, 1:2000), IRE1 (Abcam, ab37073, rabbit, 1:1000), CHOP (Abcam, ab10444, rabbit, 1:1000), eIF2α (Abcam, ab169528, rabbit, 1:1000), cleaved-caspase3 (Abcam, ab32042, rabbit, 1:1000), caspase3 (Abcam, ab13847, rabbit, 1:500) and caspase 12 (Abcam, ab13847, 1:500).
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5

Quantifying Mitosis and Apoptosis in Zebrafish

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Zebrafish embryos at the required stages were fixed in 4% PFA in DEPC-treated, calcium and magnesium-free PBS at 4°C overnight. Embryos were then co-stained with a 1:500 dilution of mouse anti-PH3 antibody (Abcam, ab14955) and 1:500 dilution of rabbit anti-caspase3 antibody (Abcam, ab13847), as described in Sorrells et al. (2013) (link). Secondary anti-mouse Alexa Fluor 488-conjugated antibody and anti-rabbit Alexa Fluor 647-conjugated antibody were both diluted in 1:500 PDT solution and incubated with the samples overnight at 4°C. DAPI was added at the final step with a 1:1000 dilution in PDT and incubated for 2 h at room temperature for nuclear detection. Images were quantified in the 3/4D Image Visualization and Analysis Software Imaris 9.2.1 (Bitplane). The percentages of mitotic or apoptotic cells for each sample were calculated as the fraction of PH3+ or caspase3+ nuclei over the total number of nuclei in the tailbud, multiplied by 100.
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6

Mitochondrial Protein Analysis in ICH

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Perihematomal brain tissues in ICH groups and corresponding area in sham group were collected for western blot anslysis. We extracted proteins of mitochondria, according to the manufacturer’s protocol from Isolation Kit for Tissue protocol (Pierce Biotechnology, Rockford, IL, United States). The detailed procedures of western was reported in one of our previous study.31 The primary antibodies were listed as follows: DJ-1 (1:15000, Abcam ab76008), p-Akt (1:2000, CST 4060s), Akt (1:3000, CST 4691), p-IKK (1:1000, CST 2697), IKK (1:1000, CST 2682), NF-κB p65 (1:3000, ab86299), Bax (1:1000, Abcam ab32503), Bcl-2 (1:500, Abcam ab59348), caspase-3 (1:500, Abcam ab13847), cleaved caspase-9 (1:1500, Abcam ab25758) and β-actin (1:5000, Abcam ab8226), NDUFS8 (1:2000, Abcam ab180183), COX IV (1:1000, CST 4844).
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7

Immunohistochemical Analysis of Ovarian Development

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Ovaries derived from gilts at age of 30–400 days were fixed in 10% (w/v) paraformaldehyde with 0.02 MPBS (pH 7.2) at 4°C for about 2 h. Next, they were cut into vertical slices of about 0.5 cm thickness and fixed in fresh 10% (w/v) paraformaldehyde for a cumulative period of 24 h. These slices were mounted in paraffin, and serially cut into 5 μm-thick sections by Rotary Microtome (MICROM, Germany), and stained with HE. Ovarian HE sections were observed and photographed under a fluorescent microscope (Zeiss, Germany).
Immunohistochemistry detection was performed by using the anti-Rabbit HRP-DAB Cell and tissue staining kit (R&D, CTS005) and anti-Goat HRP-DAB Cell and tissue staining kit (R&D, CTS008). Immunohistofluorescence examination was performed by using TSA plus Fluorescein (PerkinElmer, NEL741001KT) and Cyanine3.5 (PerkinElmer, NEL763001KT) kit. Antibodies of BMP15 (Eterlife, EL806306-100), GDF9 (Eterlife, EL901942-100), FSHR (Eterlife, EL912710), luteinizing hormone receptor (LHR) (Eterlife, EL904141), Caspase3 (Abcam, ab13847), 3βHSD (Abcam, ab154385), p-Smad1/5 (CST, 9516), Ki67 (Abcam, ab15580) and LC3B (Arigo, ARG55799) were diluted 1:100 with PBS. Other antibodies including ALK6 (Santa Cruz, sc5679), BMPR2 (Santa Cruz, sc5683), Smad2/3 (Santa Cruz, sc8332), Smad1/5/8 (Santa Cruz, sc6031R), and p-Smad2/3 (Santa Cruz, sc11769) were diluted 1:50 in PBS.
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8

Western Blot Analysis of ER Stress Markers

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Sciatic nerves and RSC96 cells were lysed on ice in the RIPA buffer with protease inhibitor cocktail and phosphatase inhibitor cocktail for 30 min to extract total proteins. The proteins were analyzed with a bicinchoninic acid (BCA) protein assay kit (Biosynthesis, China). 30 μg/lane (sciatic nerve) and 20 μg/lane (RSC96 cell) were used for Western blot analysis as previously described8 (link),27 (link). The primary antibodies were as follows: mouse anti-IRE1α (sc-390960; 1: 1000; Santa Cruz), rabbit anti-P-IRE1α (ab48187; 1: 2000; abcam), mouse anti-XBP1 (sc-8015; 1: 1000; Abcam), mouse anti-GRP78 (sc-376768; 1: 1000; Santa Cruz), mouse anti-GADD153 (sc-7351; 1: 500; Santa Cruz), rabbit anti-Caspase-3 (ab13847; 1: 1000; abcam), rabbit anti-Caspase-12 (om273459; 1: 1000; Omnimabs), mouse anti-Bcl-2 (sc-7382; 1: 1000; Santa Cruz), mouse anti-Bax (sc-7480; 1: 1000; Santa Cruz), mouse anti-p-JNK (sc-6254; 1: 1000; Santa Cruz), and rabbit anti-PGP9.5 (ab108986; 1: 2000; Abcam). Mouse anti-β-actin (TA-09; 1: 20000; Zhongshan Goldenbridge) served as the internal control. The secondary antibodies were goat anti-mouse IgG-HRP (ZB-2305; Zhongshan Goldenbridge) and goat anti-rabbit IgG-HRP (ZB-2301; Zhongshan Goldenbridge). Western Chemiluminescent HRP Substrate and exposed to X-film to form image. The protein bands were quantitated with Image J software27 (link).
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9

Caspase-3 Immunohistochemistry Protocol

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Caspase-3 staining was performed using the primary antibody (anti-caspase-3 antibody, Abcam ab13847). For caspase-3, frozen sections stored at −18°C were removed and stored for 5 min at the room temperature. The area to be painted was marked with a pen and washed twice with PBS for 5 min. They were then incubated with 0.1% Triton X-100 at the room temperature for 10 min and washed twice with PBS for 5 min. The sections were incubated with block solution for 30 min at the room temperature, and the block solution was withdrawn later by a pipette. Sections were incubated in proteinase K (Roche Applied Science Cat. No. 03115836001) for 20 min at 57°C. It was then incubated with anti-caspase-3 primary antibody in the refrigerator for 1 night and washed thrice with PBS for 5 min. It was incubated with the secondary antibody (Goat anti rabbit Texas Red, ab6719) at room temperature for 3 h and washed thrice with PBS for 5 min. The tissues were subsequently sealed with DAPI closing medium (abcam ab104139). Randomly, four areas were photographed from each tissue preparation. Two different observers counted cells stained with caspase-3 and nuclei stained with DAPI at different times and environments.
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10

Protein Expression Analysis in Lung Cancer Cells

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The total protein was extracted from the A549 and H1299 cells using a lysis buffer. Forty microgram protein was separated in 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred to polyvinylidene fluoride (PVDF) membranes. The membranes were incubated with 5% skimmed milk for 2 h at room temperature to block non-specific binding, followed by incubation with primary antibodies (CD1P1#A14883, ABclonal; Bax#ab32503, abcam; Cytochrome C# ab133504, abcam; c-caspase3#ab13847, abcam; GAPDH#ab8245, abcam) overnight at 4°C. After three washes with TBST, the blots were incubated at room temperature for 2 h with horseradish peroxidase-conjugated goat anti-rabbit antibodies. GAPDH was used as an internal control. Finally, the blot was treated with ECL plus reagent (Pierce, Rockford, IL, USA) and visualized using charged-coupled device LAS 4000 (Fujifilm, Valhalla, NY, USA).
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