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Ab52915

Manufactured by Abcam
Sourced in United Kingdom, United States, China

Ab52915 is a laboratory equipment product manufactured by Abcam. It serves as a tool for researchers to perform various scientific experiments and analyses. The core function of this product is to facilitate specific tasks within the research workflow, but a detailed description cannot be provided while maintaining an unbiased and factual approach.

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86 protocols using ab52915

1

Protein Profiling via RIPA Lysis and Western Blot

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Radioimmunoprecipitation assay (RIPA) solution encompassing protease inhibitors (Solarbio) was used to lysate total cell proteins. The proteins were then transferred to polyvinylidene difluoride (PVDF) membranes (Roche, Basel, Switzerland) after being separated on an SDS–polyacrylamide gel. At room temperature, the membranes were blocked with 5% fat-free dry milk before being cultivated with primary antibodies with diluted 2000 times. The membranes were then treated with the secondary antibody for 2 h at room temperature. ECL-enhanced chemiluminescence reagents (Amersham, Little Chalfont, UK) were used to visualize protein bands. Primary antibodies used in this investigation included anti-PDK4 (ab110336; Abcam, Cambridge, UK), anti-MMP-3 (ab52915; Abcam), anti-MMP-13 (ab39012; Abcam), anti-ADAMTS-4 (ab314856; Abcam), anti-PPARA (ab227074; Abcam), anti-PPARD (ab178866; Abcam), anti-ACSL1 (ab177958; Abcam), and anti-GAPDH (ab52915; Abcam).
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2

Chondrocyte Protein Isolation and Analysis

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Total protein was isolated from primary cultured chondrocytes using RIPA lysis buffer (150 mM NaCl, 1% NP-40, 50 mM Tris pH 8.0, 0.2% sodium dodecyl sulfate, and 5 mM NaF) containing a protease and phosphatase inhibitor cocktail (Roche, Madison, WI, USA). MMP3 and MMP13 were isolated from chondrocyte culture-conditioned medium using trichloroacetic acid, as previously described [33 (link)]. The protein extracts were then separated by SDS-PAGE and transferred onto a PVDF membrane by western blotting. The following antibodies were used for western blotting: anti-MMP3 (ab52915; Abcam, Cambridge, UK); mouse anti-MMP13 (ab51072; Abcam); mouse anti-Erk1/2 (610408; Becton Dickinson, Bergen County, NJ, USA); mouse anti-IκB (9242; Cell Signaling Technology (CST),Danvers MA, US); mouse anti-p65 (#6956; CST); mouse anti-pp65 (#13346; CST); mouse anti-p38 (#9212; CST); mouse anti-pp38 (#9215S; CST); mouse anti-c-Jun N-terminal kinase (JNK) (#9252S; CST); mouse anti-pJNK (#9251S; CST), and mouse anti-pErk (#9101S; CST). The protein bands were subsequently detected on the blotted membranes using a secondary antibody and the SuperSignal West Dura kit (Thermo Scientific, Waltham, MA, USA). Erk1/2 was used as a house-keeping protein during the subsequent analysis.
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3

Comprehensive Protein Analysis of Cellular Responses

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After the treatments, the cells were lysed on ice for 20 min with a mixture of 100 μl RIPA buffer (Fdbio science, Hangzhou, China), 1 μl protease inhibitor (Fdbio science) and 1 μl phosphatase inhibitor (Fdbio science) and centrifuged at 14,000 g for 25 min. Protein concentrations were determined using a BCA Total Protein Assay Kit (CWBIO, China). Protein samples (40 μg/lane) were separated on SDS-PAGE gels (8% or 12%, Epizyme, China) and electrotransferred to PVDF membranes. The blots were incubated with the following primary antibodies: anti-NLRP3 (1:500, A12694, ABclonal), anti-GSDMD (1:500, 39754, CST), anti-p20 (1:500, AF4005, Affinity), anti-CHOP (1:500, ab11419, Abcam), anti-GRP78 (1:500, ab21685, Abcam), anti-COL2A (1:500, ab34712, Abcam), anti-Aggrecan (1:500, ab36861, Abcam), anti-MMP3 (1:500, ab52915, Abcam), anti-MMP13 (1:500, ab39012, Abcam), anti-ADAMTS5 (1:1000, ab41037, Abcam), and anti-SREBP1 (1:1000, ab28481, Abcam). The membranes were washed and incubated with the HRP-conjugated secondary antibodies (1:8000, ABclonal, China) for 1 h. The bands were developed with chemiluminescence reagents and imaged by a myECL imager (Syngene G:BOX ChemiXT4, United Kingdom). The experiment was repeated in triplicate, and the blots were quantified by ImageJ software. An antibody against β-actin (AC026, 1:1000; ABclonal) served as an endogenous control.
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4

Immunofluorescence and Immunohistochemistry Analysis of Murine Osteoarthritis

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Immunofluorescence staining was performed on the sagittal sections of the murine knee joint to estimate the severity of OA. The incubation of primary antibody against MMP13 (rabbit, cat. no. #18165-1-AP; Proteintech) and collagen II (rabbit, cat. no. #ab34712; Abcam) on the slices was administered after antigen retrieval and blocking. Then, the sections were probed with fluorescein isothiocyanate–conjugated secondary antibodies (Alexa Fluor 555-labeled Donkey Anti-Rabbit IgG (H + L) and Alexa Fluor 488-labeled Donkey Anti-Rabbit IgG (H + L), Beyotime Institute of Biotechnology). The nuclei were counterstained with DAPI (Sigma, D9542). The images were viewed using a Nikon A1 confocal microscope and analyzed using ImageJ software.
For immunohistochemistry, the knee slices were prepared as described in the histological analysis and subsequently subjected to antibodies against MMP3 (rabbit, cat. no. #ab52915; Abcam) and ADAMTS5 (rabbit, cat. no. #ab41037; Abcam). Percentages of positive MMP3 and ADAMTS5 chondrocytes were determined by counting the number of immunostained cells and dividing by the total number of chondrocytes visualized by a hematoxylin counterstain.
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5

Investigating ATM Kinase Inhibitor Effects

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CDDP and KU55933 (a selective ATM kinase inhibitor) were purchased from MedChemExpress (MCE, Shanghai, China). CDDP was dissolved in sterile double distilled water at 1 mg/ml and stored at −80°C until dilution in the culture medium for treatment. KU55933 was dissolved at 10 mM in DMSO (Beyotime, Shanghai, China) and stored at −80°C. To inhibit cellular ATM activity in certain experiments, cells were pre-treated with KU55933 (10 μM) for 2 h. The primary antibodies including p53 (9282, CST, Danvers, MA, USA), p21 (2947, CST), γH2AX (9718, CST), cleaved Caspase-3 (9664, CST), cleaved PARP (5625, CST), Ki-67 (9027, CST), E-cadherin (14472, CST), N-cadherin (13116, CST), Vimentin (5741, CST), Snail (3879, CST), Slug (9585, CST), β-catenin (8480, CST), p65 (8242, CST), p-p65 (3033, CST), ATM (2873, CST), p-ATM (5883, CST), Chk2 (6334, CST), p-Chk2 (2197, CST), GAPDH (2118, CST), p16 (ab241543, Abcam, Cambridge, MA, USA), IL-6 (ab214429, Abcam), CXCL10 (ab214668, Abcam), MMP3 (ab52915, Abcam), IL-1α (16765–1-AP, Proteintech, Chicago, IL, USA), IL-1β (16806–1-AP, Proteintech), IL-8 (27095–1-AP, Proteintech), MyD88 (23230–1-AP, Proteintech), and TLR4 (19811–1-AP, Proteintech) were used to detect protein expression.
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6

Protein Expression Profiling Protocol

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Cells were lysed on ice for 30 min in lysis buffer containing 50 mM Tris-HCl, pH 7.4, 150 mM NaCl, 1% Nonidet P-40, and 0.1% SDS supplemented with protease inhibitors (10 mg/ml leupeptin, 10 mg/ml pepstatin A, and 10 mg/ml aprotinin). Protein fractions were collected by centrifugation at 10,000 × g for 10 min, separated on 10% SDS-PAGE gels, and then electrotransferred onto nitrocellulose membranes (Whatman, Piscataway, NJ, USA). The membranes were blocked with 5% BSA and then incubated with specific antibodies overnight at 4 °C. The primary antibodies and their sources were as follows: COL2A1 (1:1000, GB11021, Servicebio), ADAMTS4 (1:1000, ab185722, Abcam), p65 (1:5000, ab32536, Abcam), MMP3 (1:1000, ab52915, Abcam), MMP13 (1:1000, ab84594, Abcam), Caspase-7 (1:1000, DF6441, Affinity), cleaved Caspase-3 (1:1000, AF7022, Affinity), Caspase-3 (1:1000, AF6311, Affinity), Bcl-2 (1:2000, ab182858, Abcam), Bax (1:1000, ab32503, Abcam), TNF alpha (1:1000, ab1793, Abcam), β-actin (1:1000, ab6276, Abcam), and GAPDH (1:2000, AF7021, Affinity). HRP-conjugated secondary antibodies (ab205719 and ab6721, Abcam) were used at a 1:2000 dilution. The antigen–antibody complexes were visualized using an enhanced chemiluminescence detection system (Millipore, Darmstadt, Germany) according to the manufacturer’s instructions.
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7

Comprehensive Protein Expression Analysis

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The protein concentration was determined using a Bicinchoninic Acid (BCA) kit (Pierce, Rockford, IL, United States). The total protein was separated by 10% SDS-PAGE electrophoresis. After 2 h of electrophoresis, the protein was transferred to PVDF membranes (Amersham, Buckinghamshire, United Kingdom), which were sealed with 5% skimmed milk powder for 1 hour and incubated with the Anti-MMP3 antibody (1:1,000, ab52915, Abcam), Anti-MMP9 antibody (1:1,000, ab76003, Abcam), Anti-MMP13 antibody (NBP2-45887, 1:1,000, Novus, Biologicals, CO, United States), Anti-RECK antibody (Cell Signaling Technology, CST, Danvers, MA, United States), Anti-COX2 antibody (1:1,000, ab179800, Abcam), Anti-MIP-1β antibody (1:1,000, ab45690, Abcam), Anti- VCAM-1 antibody (1:1,000, ab134047, Abcam), Anti-ICAM-1 antibody (1:1,000, ab171123, Abcam), Anti-HIF-1α antibody (1:1,000, ab179483, Abcam), Anti-β-actin antibody (1:1,000, ab179467, Abcam), and Anti-GAPDH antibody (1:1,000, ab9485, Abcam) overnight. The following day, the membranes were rinsed with TBST. Horseradish peroxidase-labeled secondary anti-Goat anti-Rabbit IgG (1:3,000, ab150077, Abcam) was added and incubated at 37°C for 1 hour. The images were developed and preserved by ECL (Beyotime, Shanghai, China). The experiment was repeated three times, and each time was performed in triplicate.
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8

Western Blot Analysis of Key Proteins

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Protein extracts were separated and transferred to a polyvinylidene fluoride membrane. First, the primary antibody was added to the membrane for overnight incubation at 37 °C. Then, horseradish peroxidase-labeled secondary antibody (ab205718, goat anti-rabbit or goat anti-mouse, 1:10,000, Abcam) was added for further incubation followed by visualization using enhanced chemiluminescence (Shanghai Baoman Biotechnology, Shanghai, China). The primary antibodies procured from Abcam (CA, UK) included KLF4 (ab215036, 1:1000, rabbit; ab214666, 1:1000, rabbit), α‑SMA (ab32575, 1:1000–1:5000, rabbit), PCNA (ab92552, 1:1000–1:10000, rabbit), MMP2 (ab92536, 1:1000–1:5000, rabbit), MMP3 (ab52915, 1:1000–1:20000, rabbit), MMP9 (ab76003, 1:1000–1:20000, rabbit), p-p38 (ab4822, 1:1000, rabbit), p38 (ab170099, 1:1000–1:5000, rabbit). In addition, GAPDH (ab181602, 1:10,000, rabbit, Abcam) was used as an internal reference, and the gel image analysis software was used for quantitative analysis.46 (link)
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9

Immunohistochemical Analysis of Mouse Joints

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Mouse joint and knee tissues were sectioned into 5 μm thick samples. Antigen retrieval was performed by incubating the section with 0.1% trypsin for 40 min at 37°C or with citrate buffer (pH 6.0) for 20 min at 95°C. Anti‐CD90.2 (140 301; BioLegend), anti‐CCL2 (ab25124, Abcam, Cambridge, UK), anti‐ CXCL1 (LS‐B13384; LifeSpan BioSciences, Inc. Seattle, WA, USA), anti‐IL‐6 (ab9324, Abcam), anti‐COX2 (SC‐1745, Santa Cruz Biotechnology, Dallas, TX, USA), anti‐MMP3 (ab52915, Abcam), anti‐MMP13 (ab51072, Abcam), anti‐elastase (Ab21593, Abcam), anti‐CD68 (ab31630, Abcam), anti‐pp65 (3033, Cell Signaling Technology) and anti‐cleaved caspase 3 (9664s, Cell Signaling Technology) were used in the analysis. All immunohistochemistry signals were quantified by ImageJ software v1.60 (NIH, Bethesda, MD, USA).
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10

Western Blot Analysis of Cartilage Proteins

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Cartilage tissues and primary chondrocytes were lysed to obtain protein extracts, which were subjected to SDS‐PAGE (8%‐12% gel) and then transferred to polyvinylidene fluoride membranes (Millipore: Billerica, MA, USA). Membranes were blocked for 1 hour with 5% non‐fat milk prepared in Tris‐buffered saline (TBS) containing 0.1% Tween 20 (TBST) at room temperature (RT). Next, membranes were incubated overnight at 4°C with specific primary antibodies against PIK3R1 (Proteintech: Chicago, IL, USA, 60225‐1‐I, 1:500), cleaved caspase‐3 (Cell Signaling: Beverly, MA, USA, #9661, 1:1000), collagen Ⅱ (Novus Biologicals: Littleton, CO, USA, NBP1‐77795, 1:2000), aggrecan (abcam, ab3778, 1:1000), MMP3 (abcam: Cambridge, MA, USA, ab52915, 1:2000), MMP13 (abcam, ab39012, 1:2000) and GAPDH (Santa Cruz Biotechnology: Santa Cruz, CA, USA, sc‐32233, 1:5000). After washing with TBST, membranes were incubated with horseradish peroxidase‐labelled secondary antibodies at RT for 1 hour. The signal was visualized using an enhanced chemiluminescence reagent according to the manufacturer's protocol (Millipore: Billerica, MA, USA). GAPDH served as a loading control. The protein expression was quantified by ImageJ (http://rsb.info.nih.gov/ij/).
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