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J 815 spectrometer

Manufactured by Jasco
Sourced in Japan, United States, Germany

The J-815 spectrometer is a versatile laboratory instrument designed for spectroscopic analysis. It is capable of measuring the absorption, reflection, or circular dichroism of samples across a wide range of wavelengths. The core function of the J-815 is to provide accurate and reproducible spectroscopic data to support scientific research and analysis.

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192 protocols using j 815 spectrometer

1

Circular Dichroism Spectroscopy of MBD Proteins

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Circular dichroism (CD) spectra were recorded in the far-UV region using a J-815 JASCO spectrometer (Jasco International Co. Ltd., Hachioji, Tokyo, Japan). MBD constructs, alone or in complex with DNA, were diluted to 5 μM with 100 mM potassium phosphate buffer, pH 6.8 (BioBasic, Canada). The spectra were recorded at 288 K with the spectrometer at wavelengths ranging from 190 to 260 nm, using a bandwidth of 1 nm, through a 1 mm cuvette. The spectrum of the buffer alone was also recorded and subtracted from the protein spectrum. Molar residue ellipticity values were calculated using the spectral analysis software (Jasco Spectra Management software). All spectra were measured in triplicate. The secondary structure content of the MBD constructs was calculated using CONTINLL and reference set 7 on the Dichroweb website48 (link).
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2

Circular Dichroism and Zeta Potential Analysis

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Circular dichroism (CD) measurements were taken using J-815 Jasco Spectrometer with the following parameters; 190–300 nm wavelength, 4 s digital integration, 1 nm band thickness and 0.1 nm data interval. Data was formed by taking the average of three consecutive measurements. Zeta potential measurements of individual PAs and self-assembled nanofibers were performed with a Malvern Zeta-ZS Zetasizer with a 5 × 10−5 M at the indicated volume ratios for each peptide.
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3

Circular Dichroism Analysis of MARV GP2

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Circular dichroism (CD) spectra of MARV GP2 constructs were recorded at room temperature on a Jasco J-815 spectrometer with a 1 cmpath-length cuvette. Protein concentrations were determined by the absorbance at 280 nm. Full wavelength spectra were obtained with a 0.5 nm step size and represent the average of two scans. The signal was converted to mean molar ellipticity (θ) using the equation: θ (in deg cm2 dmol−1) = millidegrees/(pathlength in millimeters × the molar protein concentration × the number of residues).
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4

Far-UV CD Spectroscopy of HAS-EA Interaction

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The far UV CD spectrum of HAS (5 µM) with increasing concentration of EA were recorded using a JASCO-J815 spectrometer equipped with a temperature controller at 25 °C (298 K) in a quartz cuvette of 2 mm path length. The scan rate was 100 nm/min, and each final spectrum was an average over three scans.
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5

Circular Dichroism Analysis of AzoDiTAB Cleavage

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Circular dichroism (CD) spectra were recorded on a Jasco J815 Spectrometer (Japan) using 0.5 mL quartz cuvettes with a 1 mm path length at room temperature. The measurement was done in the 240–320 nm wavelength range at a scanning speed of 200 nm/min. All CD spectra were recorded three times and averaged. The melting curve at 265 nm was detected between 15 and 90°C at a scanning speed of 2°C/min. For the cleavage assay, 400 μM of AzoDiTAB was incubated with 10 mM GSH. The mixture was then diluted 5 times at a suitable time, which was used for subsequent measurement. All test samples were prepared in the buffer (10 mM Tris-HCl, pH 7.0). Before the measurement, the CD spectrum of the buffer was subtracted from the spectra of the samples.
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6

Circular Dichroism Spectroscopy of Proteins

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CD spectra were collected using a Jasco J-815 spectrometer (Jasco). Protein solutions were buffered with 10 mm sodium phosphate, pH 7.2. Protein concentrations were calculated by measuring the absorbance at 280 nm in conjunction with the predicted extinction coefficient of 30,940 m−1cm−1 for both CBM and CBM-CT. The extinction coefficient was calculated using Protparam from the ExPASY server (31 ), which employs an Edelhoch based method (32 (link)– (link)34 (link)). Spectra were acquired using a quartz cuvette with a 0.1-cm path length. The spectra were collected between 260–180 nm at 50 nm min−1 at 0.5-nm increments with a response time of 0.5 s and a data pitch of 0.5 nm. Base lines were collected in the same manner using 10 mm sodium phosphate buffer, pH 7.2. Spectra were averaged over 4 scans then corrected for solvent background and smoothed using a Savitzky-Golay method (35 ). To determine secondary structure components, various deconvolution methods were applied to the data, which were accessed using the DICHROWEB server (36 (link)).
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7

G4 Folding and Binding Spectroscopy

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Example 3

500 μL Aliquots of 22AG and c-myc were folded at 3 μM by rapid annealing (2 min. at 90° C. followed by cooling in ice) in 10 mM lithium cacodylate (pH 7.2) and 100 mM potassium chloride. G4 binders were prepared in the same buffer at 37.5 or 75 μM, such that 0.5 equiv. binder was equivalent to 10 or 20 μL additions. Spectra at 0, 0.5, 1.0, 1.5, 2.0, 3.0, and 5.0 equivalents of binder added to G4 were acquired after 15 minutes of equilibration. Each spectrum was collected using a Jasco J-815 spectrometer with the following experimental parameters: wavelength range: 200-500 nm, data pitch: 1 nm, D.I.T.: 0.5 s, scan speed: 100 nm/min, accumulations: 3. Acquired data was then blank-corrected and baseline-corrected. Curves were smoothed by taking the average of the ellipticity data from the preceding 4 wavelengths as well as the current wavelength.

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8

Spectroscopic Analysis of Caffeic and Ferulic Acids

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The UV and ECD spectra were recorded on a JASCO J-815 spectrometer (Loveland, CO, United States) in MeOH or MeCN using a 1-cm cell. Scan speed was set at 200 nm/min in continuous mode between 600 and 190 nm. NMR spectroscopic data were recorded on a Bruker Avance Neo 600 MHz NMR spectrometer equipped with a QCI 5-mm cryoprobe and a SampleJet automated sample changer (Bruker BioSpin, Rheinstetten, Germany). One-dimensional (1D) and 2D NMR experiments (1H, COSY, ROESY, HSQC, and HMBC) were recorded in DMSO-d6 or CD3OD. Chemical shifts were reported in parts per million (δ) and coupling constants (J) in Hz. The residual DMSO-d6 signal (δH 2.5; δC 39.5) and CD3OD signal (δH 3.31; δC 49) were used as internal standards for 1H and 13C NMR, respectively. Trans-caffeic acid (reference C0625-25 g, >98% purity) was purchased from Sigma-Aldrich (Steinheim, Germany), and trans-ferulic acid (reference 9936, 99% purity) was purchased from Roth (Karlsruhe, Germany).
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9

Characterization of Polypeptide Self-Assembly

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Circular dichroism (CD), X-ray diffraction (XRD), small-angle X-ray scattering (SAXS), and Fourier transform infrared (FTIR) were employed to measure the polypeptide secondary conformation and self-assembled structures. CD measurements of polypeptide samples were conducted at the concentration of 0.1 mg mL−1 on a JASCO J-815 spectrometer (JASCO Corporation, Japan) in a 0.1 mm quartz cell from 190 nm to 260 nm of the wavelength. A Rigaku Ultima IV-9407F701 X-ray spectrometer (Rigaku Corporation, Japan) was used to record XRD patterns of star-shaped polypeptide hydrogel samples. XRD system scanned the patterns from 2θ = 5° to 40° at a speed of 10° min−1 by using radiation (50 kV, 250 mA) and Cu K alpha (0.154 nm). At 25 °C, SAXS profiles of the sol and gel samples were obtained under 4 × 10−1 torr and the voltage and current were controlled in 45 kV and 650 μA, respectively. The SAXS measurements were run on a Bruker diffractometer (NanoSTAR-SHAPED U system, Bruker AXS GmbH, Germany). The samples were contained in 1 mm quartz capillary tubes at different sol and gel concentrations. Before the measurements, a silver behenate was used as a standard sample for calibrating the SAXS. Attenuated total reflectance FTIR spectra of freeze-dried gel samples were recorded on a Thermo Nicolet Nexus 670 FTIR spectrometer (Thermo Electron Corporation, USA).
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10

Far-UV Circular Dichroism Spectroscopy

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The ECD spectra were recorded on a J-815 spectrometer equipped with a CDF-426S/16 Peltier unit (Jasco, Japan) to control the sample temperature. The filtered plasma was diluted four-times with phosphate buffer ( pH = 7.4, NaCl 137 mM, KCl 2.7 mM, KH 2 PO 4 1.5 mM, Na 2 HPO 4 8 mM) and measured in a 0.01 mm Suprasil quartz cuvette (Hellma, Germany) in the 280-185 nm spectral range. The following parameters were used: 2 nm bandwidth, 50 nm min -1 scanning speed, 2 s data integration time, Peltier unit set to 23 °C. The spectra represent the average of 5 accumulations.
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