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20 protocols using gfp 1020

1

Frozen Embryo Sectioning and Immunostaining

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For frozen sections, fixed embryos were rinsed in PBS and incubated in 30% sucrose solution prepared in PBS until embryos sunk to the bottom of the tube. This was followed by incubation in 50/50 mix of 30% sucrose solution and optimum cutting temperature (OCT) compound (Tissue-Tek) at 4°C overnight. Embryos were then embedded in OCT and frozen using an isopentane/dry ice bath. The following primary antibodies were diluted in blocking buffer (10% donkey serum, PBS, 0.05% Tween-20) and used to stain frozen sections overnight at 4°C: anti-VEGFR2 (1:200, R&D, #AF644), anti-ERG (1:100, Abcam, #ab110639), anti-GFP (1:500, Aves labs, #GFP-1020), and anti-Cre (1:500, Millipore, #MAB3120). Slides were washed in PBS containing 0.05% Tween 20 (PBS-Tween) with three changes of washing buffer, 10 min each, and then incubated with Alexa-conjugated 2° antibodies, diluted 1:300 in blocking buffer for 2 hours at room temperature. After washing in PBS-Tween, sections were mounted using a 1:1 mixture of methanol and glycerol (v/v) to extinguish the native GFP and tdTomato fluorescence. Slides were imaged using Olympus FV500 confocal microscope. Each experiment was repeated at least three times, using 3 independent embryos.
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2

In situ hybridization with Tyramide Amplification

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Probe templates were amplified by PCR from cDNA. cRNA probes were generated using Digoxigenin RNA Labeling Mix. Brains were cryosectioned after 4% paraformaldehyde perfusion, post-fixed in 4% paraformaldehyde, and prehybridized for 1 hour. Probes were hybridized overnight at 65°C, and washed for stringency, then detected with sheep anti-Digoxigenin and developed using Cy3 Tyramide Signal Amplification kit, followed by anti-Gfp(Aves, GFP-1020) and mouse anti-CNP1(Millipore, MAB326), detected with appropriate Alexa-dye labeled secondaries. Slides were imaged using an UltraView Vox spinning-disk confocal microscope.
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3

Immunostaining of Fixed Brain Tissue

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Dissected brains were fixed overnight in 4% paraformaldehyde in PBS and kept in 100% methanol at −20°C. Following rehydration and vibratome sectioning at 50 μm thickness, the following primary antibodies were used: chicken anti-GFP (1:500, Aves Labs, GFP-1020), mouse anti-glutamine-synthase (1:500, Millipore, MAB302), rabbit anti-PCNA (1:250; Tebu-Bio, GTX124496). Goat antibodies coupled to AlexaFluor dyes (488, 555 or 647; Invitrogen) were used as secondary antibodies. Images were taken using a confocal microscope (LSM700, Zeiss) and analyzed with Imaris 7 (Bitplane).
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4

Immunostaining of Embryonic Samples

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Dissected embryos were fixed in 4% paraformaldehyde for 1 h at room temperature with gentle agitation, washed in PBS, and stored in PBS+0.2% sodium azide on a short-term basis at 4°C until initiation of immunostaining. Immunostaining was performed in PCR strip tubes. Embryos were incubated in blocking solution: PBS+5% normal donkey serum, 0.2% sodium azide, 0.5% Triton X-100 (Sigma-Aldrich, X100-500 ml) with 100 μg/ml unconjugated Fab fragment donkey anti-mouse (Jackson ImmunoResearch, 715-007-003) for 2 h at 37°C with gentle rocking agitation. Following PBS washes, primary staining was carried out in blocking solution overnight and subsequently washed with PBS. Secondary staining incubation was carried out in blocking solution for 2-3 h protected from light, and embryos were subjected to final PBS washes. All steps of the immunostaining protocol were performed at 37°C with gentle rocking and rotation. Antibodies used in this study were: sheep polyclonal Foxc2 (R&D Systems, AF6989), chicken polyclonal GFP (Aves Labs, GFP-1020), rabbit polyclonal Cre (Millipore, 69050). Light-sheet embryo images were acquired using a Z1 light sheet microscope (Zeiss) and processed as described (Dominguez et al., 2023 (link)).
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5

Immunohistochemistry of Murine Lung Tissues

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For immunohistochemistry, lungs were perfused with PBS and then inflated and fixed with 4% PFA overnight. Fixed lungs were washed three times with PBS, gradually dehydrated in ethanol, and embedded in paraffin. Paraffin sections (7 μm) were stained with the following primary antibodies: chicken anti-GFP (1:400; Aves Laboratories, GFP1020), rabbit anti-proSftpc (1:500; Millipore, AB3786), goat-anti CC10 (1:10,000; kindly provided by Barry Stripp), rabbit-anti CC10 (1:10,000; Barry Stripp), mouse anti-Foxj1 (1:200; eBioscience, 14-9965), rabbit anti-Sox2 (1:1000; Seven Hills Bioreagents, WRAB-Sox2), mouse anti-Trp63 (1:200; Santa Cruz Biotechnology), rabbit-anti-Krt5 (1:500; Covance), rabbit anti-Krt8 (1:200; Developmental Studies Hybridoma Bank), and rabbit anti-Sox9 (1:1000; Millipore). Alexa-fluor-coupled secondary antibodies (Invitrogen) were used at 1:400 dilution. All images were captured on a Leica Sp2 laser scanning confocal microscope.
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6

Immunolabeling of Brain Sections

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Brains were removed and fixed in 4% paraformaldehyde in PBS after transcardial perfusion, sectioned at 50–80 μm on a vibratome (Leica VT1000S) and processed for immunocytochemistry as free-floating sections[12 ]. Primary antibodies included mouse anti-pS6 (1:2,000, Cell Signaling # 2211), chicken anti-GFP (1: 1,000, Aves GFP-1020), mouse anti-Nestin (1:20, Millipore clone rat-401), mouse anti-nonphorphorylated neurofilamin H (1: 200, Biolegend, clone#SMI32). Fluorescently conjugated secondary antibodies (AlexaFluor 488, 594 or 647) were obtained from Molecular Probes, and nuclei were labeled with Bisbenzimide (Molecular Probes H1398).
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7

Whole-mount immunohistochemistry of fixed brains

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Whole brains were fixed overnight in 4% paraformaldehyde in PBS and kept in 100% methanol at −20°C. Following rehydration, brains were either embedded in 3% agarose blocks and vibratome sectioned (50 µm) or processed for whole-mount immunohistochemistry. An antigen-retrieval step was performed for BrdU and/or Pcna immunolabelling: for BrdU, sections were incubated in 2 M HCl at room temperature for 30 min; for Pcna, brains were incubated in Histo-VT One (Nacalai Tesque) for 60 min at 65°C. The following primary antibodies were used: MCM5 (1:500, kindly provided by Soojin Ryu, Max Planck Institute for Medical Research, Heidelberg, Germany), anti-BLBP (1:1000, rabbit, Millipore, ABN14), anti-PCNA (1:250, mouse IgG2a, Santa Cruz Biotechnology, sc56; 1:500, rabbit, Genetex, GTX124496), anti-BrdU (1:150, rat IgG1, Abcam, ab6326), anti-GFP (1:1000, chicken, Aves laboratories, GFP 1020), anti-glutamine synthetase (1:1000, mouse IgG2a, Millipore, MAB302), anti-dsRed (1:250, rabbit, Clontech, 632496), anti-Sox2 (1:500, rabbit, Abcam, ab97959; 1:200, mouse IgG1, Abcam, ab171380) and anti-active Caspase-3 (1:300, rabbit, BD Pharmigen, 559565). Secondary antibodies raised in goat coupled to AlexaFluor dyes (Invitrogen) were used (1:1000).
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8

Immunostaining of Fixed Brain Tissue Post-CCI Injury

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At P90 (30 days after CCI injury), animals were perfused transcardially with 4% paraformaldeyde (PFA) in 0.1M PBS, pH 7.4. Brains were removed and post-fixed overnight in the same solution. Free-floating vibratome sections (50 ^m) were processed using standard immunostaining procedures according to our published protocols (Hunt et al., 2013 (link); Dinday et al., 2017 (link)). Primary antibody dilutions were as follows: chicken anti-green fluorescent protein (GFP; 1:1000; Aves, Cat No. GFP1020); mouse anti-neuronal nuclei (NeuN; 1:1000; Millipore, Cat No. MAB377), mouse anti-parvalbumin (PV; 1:500; Sigma, Cat No. P3088); rabbit anti-somatostatin (SST; 1:200; Santa Cruz, Cat No. SC-7819); rabbit anti-calretinin (CR; 1:1000; Millipore, Cat No. AB5054); rabbit anti-neuronal nitric oxide synthase (nNOS; 1:1000; Millipore, Cat No. AB5380); mouse anti-reelin (1:500; Millipore, Cat No. MAB5364). Secondary antibodies included Alexa Fluor 488 and 594 (1:1000; Life Technologies). Sections were then mounted on charged slides (Superfrost plus; Thermo Fisher Scientific) with Aqua-Mount medium.
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9

Immunofluorescence Labeling of Mouse Spinal Cord

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The procedures were described previously37 (link),62 . Deeply anesthetized mice (ketamine, 90 mg/kg and Xylazine, 10 mg/kg) were perfused transcardially with 0.01 M PBS (PH 7.4) and paraformaldehyde (PFA) (4% in PBS). Spinal cord and brain were removed and post-fixed in 4% PFA for 2–4 h. The tissues were then cryoprotected in 20% sucrose overnight at 4 °C. Free-floating frozen sections were incubated with 2% donkey serum and 0.3% Triton X-100 for 1 h at room temperature followed by incubation with primary antibodies overnight at 4 °C. The sections were then washed and incubated with secondary antibodies for 2 h at room temperature. The following primary antibodies were used: chicken anti-GFP (1:500, Aves Labs, GFP-1020), guinea-pig anti-NK1R (1:500, AB15810, EMD Millipore), rabbit anti-FG (1:5000, AB153, Millipore). The following secondary antibodies were used: Alexa-Fluor 488 conjugated donkey anti-chicken (1:1000, Jackson ImmunoResearch, 703–545–155), Cy3-conjugated donkey anti-rabbit (1:1000, Jackson ImmunoResearch, 711–165–152) and Cy5-conjugated donkey anti-guinea pig 1(:1000, Jackson ImmunoResearch, 703–175–148). Fluorescent Images were taken using a Nikon C2+ confocal microscope system (Nikon Instruments, Inc.).
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10

Immunolabeling Protocols for Neural Markers

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Primary antibodies: anti-cFos (1:500, goat polyclonal, Santa Cruz catalog #sc-52-G; 1:50, rabbit monoclonal, Cell Signaling, catalog # 2250); anti-TH (1:1000, rabbit polyclonal, Emd millipore, catalog #AB152; 1:1000 mouse monoclonal, catalog #MAB5280 or 1:1000, Chicken polyclonal, Aveslabs, cataglog#TYH); anti-mCherry (1:1000, ThermoFisher Scientific, rabbit polyclonal ,catalog#PA5-34974); anti-GFP (1:500, Chicken polyclonal, Aveslabs, catalog#GFP-1020 or 1:1000, rabbit polyclonal, Emd millipore, catalog#AB3080). Fluorophore-conjugated secondary antibodies were purchased from ThermoFisher Scientific. Antibodies were diluted in PBS with 10% NGS and PBST.
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