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8 protocols using bazedoxifene

1

Metabolic Modulators for Cell Line Screening

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Ponatinib, Bazedoxifene and Lopinavir were purchased from Selleck Chemicals (Houston, TX, USA). 2-Deoxy-D-glucose (2-DG), O-benzyl-L-Serine (BenSer), 6-diazo-5-oxo-norleucine (DON), bis-2-(5-phenylacetamido-1,2,4-thiadiazol-2-yl)ethyl sulfide (BPTES), Telaglenastat (CB-839), epigallocatechin gallate (EGCG), 2-allyl-1-hydroxy-9,10-anthraquinone (R162), L-buthionine-sulfoximine (BSO), L-glutamine, glutamic acid and dimethyl 2-oxoglutarate were all purchased from Sigma (Sigma-Aldrich, St. Louis, MO, USA). The caspase-3 fluorescence dye was from Sartorius (Sartorius AG, Göttingen, Germany). Human IL-11Rα and negative control siRNA were from Thermofisher Scientific (Scoresby, VIC, Australia).
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2

Vincristine Cytotoxicity Assay in MB Cells

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Cells were seeded at a density of 105 cells/well in 96-well plates for 16 h to facilitate adhesion, before the addition of vincristine (Sigma, Oakville, ON, Canada) at various concentrations. After 48 h, the fluorometric reagent Cell Titer Blue (Promega, Madison, WI, USA) was added and fluorescence (560Ex/590Em) measured on a spectrophotometer (PE Enspire, Waltham, MA, USA) after 4 h. In some experiments involving microglia co-culture conditioning, MB cells were treated with ruxolitinib, bazedoxifene, or SC144 (Selleckchem, Houston, TX, USA) during the wean-off three day period, prior to replating cells in 96-well plates for combination treatment of the same agent with vincristine. All assays were conducted as three replicates per treatment condition.
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3

Comparative Evaluation of Selective ER Modulators

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Fulvestrant (CAS No: 129453–61-8, > 99% purity) was purchased from MedChem Express. Estradiol (E2) (E8875), lasofoxifene (SML1026), 4-hydroxytamoxifen (H7904), and tamoxifen (T5648) were purchased from Sigma. Raloxifene (2280) was purchased from Tocris. GDC-0810 (S7855), bazedoxifene (S2128), and AZD9496 (S8372) were purchased from Selleckchem. GW5638 (5638), GW7604 (7604), and RU 58,668 (RU) were provided by Donald McDonnell (Duke University). G1T48 was provided by G1 Therapeutics, Inc., as analytical grade compound.
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4

Compound Library Screening for Bioactive Inhibitors

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An 1,833-member bioactive compound library, and an independent 86-member PI3K signaling inhibitor library comprising mTOR, PI3K and AKT pathway inhibitors, were obtained from Selleck Chemicals and stored at −80°C. Erastin2, annotated as compound 35MEW28 (Ref.51 (link)) and ML162 were synthesized by Acme Bioscience. Erastin was the kind gift of B. Stockwell (Columbia). Chemical used (supplier) were: DMSO, ferrostatin-1, thapsigargin, tunicamycin, cycloheximide, L-arginine, D-arginine and L-citrulline (Sigma-Aldrich Corporation); bortezomib, rapamycin, etoposide and buthionine sulfoximine (Thermo-Fisher Scientific); INK 128, AZD8055, vinblastine, camptothecin, sorafenib, bazedoxifene, raloxifene and JTC-801 (Selleck Chemicals); and GCN2iB (MedChemExpress). buthionine sulfoximine was dissolved directly into cell media. All other drugs were prepared as stock solutions in DMSO. Stock solutions were stored at −20˚C.
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5

Cell Line Validation Protocol

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Fulvestrant (1047) and Raloxifene (2280), were purchased from Tocris. Estradiol (E8875) and 4-hydroxytamoxifen (H7904) were purchased from Sigma. Bazedoxifene (S2128) was purchased from Selleckchem. Lasofoxifene (HYA0038K), RAD1901 (HY19822A), GDC-0810 (HY12864) and AZD9496 (HY12870) were purchased from MedChem Express. SKBR3 and the MCF7 cells used to generate the MCF7I lines were purchased from ATCC which employs STR analysis. MCF7B and T47D cell lines were published previously (32 (link),33 (link)). The McDonnell laboratory routinely completes PCR based Mycoplasma testing on all cell lines. All cell lines were used within 10–15 passages of thawing.
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6

Compound Library Screening for Bioactive Inhibitors

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An 1,833-member bioactive compound library, and an independent 86-member PI3K signaling inhibitor library comprising mTOR, PI3K and AKT pathway inhibitors, were obtained from Selleck Chemicals and stored at −80°C. Erastin2, annotated as compound 35MEW28 (Ref.51 (link)) and ML162 were synthesized by Acme Bioscience. Erastin was the kind gift of B. Stockwell (Columbia). Chemical used (supplier) were: DMSO, ferrostatin-1, thapsigargin, tunicamycin, cycloheximide, L-arginine, D-arginine and L-citrulline (Sigma-Aldrich Corporation); bortezomib, rapamycin, etoposide and buthionine sulfoximine (Thermo-Fisher Scientific); INK 128, AZD8055, vinblastine, camptothecin, sorafenib, bazedoxifene, raloxifene and JTC-801 (Selleck Chemicals); and GCN2iB (MedChemExpress). buthionine sulfoximine was dissolved directly into cell media. All other drugs were prepared as stock solutions in DMSO. Stock solutions were stored at −20˚C.
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7

Evaluating Novel Drug Combinations

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The following drug treatments were used in the study: bazedoxifene (BZA) (Selleck Chem; S212850), 5-fluorouracil (5-FU) (Accord), oxaliplatin (OX) (Accord), SN38 (Selleck Chem; S4908), LCL161 (Selleck Chem; S7009) and Birinapant (Selleck Chem; S7015).
The following cytokine treatments were used in the study: human recombinant IL-6 (Thermo Fisher; BMS341), human recombinant IL-11 (Thermo Fisher; PHC0115) and human recombinant TNF-α (Thermo Fisher; RP75738).
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8

Estradiol and Bazedoxifene Compound Synthesis

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17β Estradiol, purchased from Sigma Aldrich (St. Louis, MO) was dissolved in DMSO and diluted to various concentrations. Bazedoxifene, purchased from Selleckchem (Houston, TX). EC312, EC313 and EC317 were synthesized in-house at Evestra, Inc. based on structure activity relationship studies.
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