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Anti sox9

Manufactured by Abcam
Sourced in United States, United Kingdom

Anti-SOX9 is a primary antibody that specifically recognizes the SOX9 transcription factor. SOX9 is a key regulator of chondrocyte differentiation and is involved in the development of various tissues, including cartilage, bone, the heart, and the nervous system. This antibody can be used for applications such as Western blotting, immunohistochemistry, and immunocytochemistry to detect and analyze the expression of SOX9 in biological samples.

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52 protocols using anti sox9

1

Subcellular Localization of Sox9 and GluN1

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Cells of different experimental groups were cultured on coverslips as described previously. Cells were fixed in Saint-Marie’s fixative (99% ethanol and 1% anhydrous acetic acid) for 1 h. After washing in 70% ethanol, non-specific binding sites were blocked in PBST supplemented with 1% bovine serum albumin (BSA, Amresco LLC, Solon, OH, USA) at 37 °C.
For immuncytochemical staining, cells were incubated with anti-Sox9 (Abcam, Cambridge, UK; Cat. No.: ab26414) at a dilution of 1:600, and anti-GluN1 (Cell Signaling, Danvers, MA, USA; Cat. No.: 5704) antibodies at a dilution of 1:500 at 4 °C overnight. Primary antibodies were visualised with anti-rabbit Alexa Fluor 555 or anti-mouse Alexa Fluor 488 secondary antibodies (Life Technologies Corporation, Carlsbad, CA, USA; Cat. No.: A27039; A28175) at a dilution of 1:1000. Cultures were mounted in Vectashield Hard Set mounting medium (Vector Laboratories Ltd.) containing DAPI to visualise the nuclei of cells. For investigation of subcellular localization of Sox9 and GluN1, images were taken with an Olympus FV1000S confocal microscope (Olympus Co. Tokyo, Japan) using a 60× oil immersion objective (NA: 1.3). For excitation, laser lines of 543 nm and 488 nm were used. The average pixel time was 4 μs. Images of Alexa Fluor 555, Alexa Fluor 488 and DAPI were overlaid using Adobe Photoshop version 10.0 software.
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2

Western Blot Analysis of Stem Cell Markers

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The tumor cells were lysed by using RIPA buffer with Phenyl methane sulfonyl fluoride (PMSF). The same amount of protein was separated with 10% SDS-PAGE gel and then was transferred onto PVDF membranes (Biotech). Subsequently, 5% skim milk (diluted in PBS) was used to blocked the PVDF membranes for 2 h at RT. And then the membranes were incubated with anti-Gli1 (Santa), anti-CD44 (Abcam), anti-LSD1 (ZSGB-BIO), anti-Sox9 (Abcam), anti-β-actin (Abcam). The next step is to incubate anti-rabbit/mouse for 2 h. Detection was performed by the ECL kit.
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3

Western Blot Analysis of Sox9 Protein

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Harvested fresh samples were ground in liquid nitrogen and lysed with mammalian protein extraction reagent (Pierce, Rockford, IL, USA) supplemented with complete protease inhibitor. The Pierce BCA Protein Assay Kit (Pierce) was used to determine the total protein content, which was adjusted to 10 μg/μl. Samples (10 μl) were loaded onto 10-14% SDS polyacrylamide gels (SDS-PAGE) and transferred to a polyvinylidene fluoride (PVDF) membrane (Millipore Corporation, Bedford, MA, USA). The membranes were blocked using 5% skim milk in 0.05% Tris-buffered saline/Tween 20 (TBST) for 1 hour. Then, the membrane was incubated at 4°C overnight with the following primary antibodies: anti-Sox9 (Abcam, Cambridge, MA, USA, 1 : 500) and anti-β-actin (Cell Signaling, Danvers, MA, 1 : 1000). After further washes, the chemiluminescence of the blot was processed with the ECL western blotting substrate (Pierce).
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4

Western Blot Analysis of Stem Cell Markers

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Proteins were resolved using 20% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), followed by transfer of separated proteins onto a nitrocellulose membrane. Non-specific antigens on the membrane were blocked by incubating the membrane in 1×TBST (Tris-buffered saline with 0.1% Tween-20) containing 5% non-fat skim milk at room temperature for 1 h. Afterward, the membrane was incubated overnight with primary antibodies at 4°C followed by incubation with the secondary antibody (goat anti-mouse or anti-rabbit IgG antibody) at room temperature for 1 h. The primary antibodies used was anti-caspase3 (Abcam, US, 1;500), anti-Bax (R&D system, US, 1:1000), anti-Bcl2 (Abcam, US, 1;500), anti-Sox2 (Abcam, US, 1:1000), anti-Sox9 (Abcam, US, 1:1000), anti-CD133 (Proteintech, US, 1;1000), anti-Nanog (Proteintech, US, 1:1000), anti-SOCS2 (Abcam, US, 1:1000), anti-SOCS5 (Abcam, US, 1:500), anti-PTPN1 (Proteintech, US, 1:2000), anti-PTPN11 (Proteintech, US, 1:500), anti-STAT3 (Proteintech, US, 1:1000) The immunoblots were developed using the BeyoECL kit (Beyotime, China) and Tanon 5200 system (Tanon, China).
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5

Western Blot Analysis of Lineage-Specific Markers

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Cells were lysed using lysis buffer added with protease inhibitor at various time points after induction. The total protein concentrations were measured using a BCA protein assay kit (Thermo). Equal amounts f cell lysates were loaded onto a 10% SDS- polyacrylamide gel and transferred to 0.22 μm polyvinylidene fluoride membranes (Roche). After blocking with fat-free milk, the following antibodies were used: anti-RUNX2 (1:1000, Cell Signaling Technology), anti-SOX9 (1:1000, Abcam), and anti-PPARG (1:1000, Abcam). β-ACTIN was used as internal reference.
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6

Targeted Proteomics and Western Blot Analysis

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For PRM analysis, protein treatment was performed in the same way as in the iTRAQ experiment. The peptide information was imported into the software Xcalibur for PRM method setting. Chromatographic separation was carried out using high performance liquid chromatography (HPLC) system. The samples separated by HPLC were subjected to PRM mass spectrometry using a Q-Active HF mass spectrometer (Thermo Scientific). Finally, Skyline 3.5.0 software was used to analyze the original PRM files.
For Western blot assay, the procedure of cell lysate, protein quantification, separation and transfer were performed as before (Li et al., 2018 (link)). Then, membranes were blocked in skim milk at room temperature (RT) and probed overnight with primary antibodies including anti-YAP1 (1:2000; cat. no. ab109307; Abcam), anti-SOX9 (1:2000; cat. no. ab185966; Abcam), anti-PRKD3 (1:2000; cat. no. ab252982; Abcam), anti-GSK-3β (1:2000; cat. no. ab32391; Abcam), and anti-β-actin (1:1,000; cat. no. TA-09; Zhongshan Jinqiao Bio-Technology Co., Ltd.) as the internal reference. After incubation with secondary antibody at RT for 1.5 h, the PVDF membranes were incubated with ECL reagent. The images were captured in imaging system (GE Healthcare Life Sciences).
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7

Western Blot Analysis of Apoptosis and EMT Markers

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Proteins were separated by 10% SDS-PAGE and transferred to PVDF membrane. TBST containing 5% skim milk was sealed at 37 °C for 2 h. The membranes were then incubated with primary antibodies including anti-Bcl-2 (#ab32124, 1/1000; Abcam), anti-Bax (#ab32503, 1/1000; Abcam), anti-Vimentin (#ab92547, 1/1000; Abcam), anti-E-cadherin (#ab231303, 1/1000; Abcam), anti-Cyclin D1 (#ab16663, 1/200; Abcam), anti-SOX9 (#ab185230, 1/1000; Abcam), anti-p-PI3k (#ab182651, 1/1000; Abcam), anti-PI3K (ab191606, 1/1000; Abcam), anti-p-AKT (#ab38449, 1/1000; Abcam), anti-AKT (ab131168, 1/1000; Abcam) at 4 °C overnight, the membrane was washed with TBST three times, five min each time. Then, the membranes were incubated with secondary antibodies for 2 h at room temperature, the membranes were washed with TBST three times, five min each time. ECL kit was used for chemiluminescence detection. Image Pro Plus 6.0 was used to analyze the relative expression of target protein, which was expressed by the ratio of density ratio to GAPDH.
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8

Protein Expression Analysis in Cells

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Proteins were extracted with lysis buffer and phenylmethanesulfonyl fluoride (Beyotime, China). A bicinchoninic acid kit (Beyotime, China) was used to detect the protein concentration. Total cell proteins were separated by SDS-PAGE (Beyotime, China) and transferred to a polyvinylidene fluoride membrane. The membranes were blocked in 5% skimmed milk for 1 h at room temperature and incubated in specific antibodies at 4°C overnight. The blots were washed three times with TBST and incubated in secondary antibodies for 1 h at room temperature. The Immobilon Western Chemiluminescent Kit (NCM Biotech, China) was used to detect protein levels. The primary antibodies used included: anti-aggrecan (Santa Cruz Biotechnology, USA; 1:500), anti-Sox9 (Abcam, USA; 1:1000), anti-Bcl-2 (Abcam, USA; 1:2000), anti-Bax (Abcam, USA; 1:2000), anti-SIRT1 (Abcam, USA; 1:1000), anti-GAPDH (Abcam, USA;1:10000), anti-NF-κB p65 (Abcam, USA; 1:1000), anti-Acetyl-NF-κBp65 (Lys310) (Affinity Biosciences, USA; 1:500), anti-BMP2 (Immunoway, USA; 1:500), anti-Col2a1 (Immunoway, USA; 1:500), anti-MMP2 (Immunoway, USA; 1:500), anti-Cleaved-Caspase3 (Immunoway, USA; 1:1000), and anti-Cleaved-PARP-1 (Immunoway, USA; 1:500).
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9

Immunofluorescence Staining for Cellular Differentiation

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For immunofluorescence staining, the anti-PPARγ, anti-RUNX2, anti-osteocalcin, or anti-SOX-9 antibodies (all from Abcam) were diluted in PBS to achieve a final concentration of 200 μg L−1 and incubated overnight at 4 °C for adipogenesis, osteogenesis, or chondrogenesis. The samples were washed with PBS and then stained with the corresponding secondary antibodies. The samples were washed again with PBS, and fluorescence micrographs were captured using an inverted fluorescence microscope.
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10

Immunoblotting Analysis of Cell Signaling

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Cell lysates (20 μg protein each) were separated by 7.5% SDS-polyacrylamide gel electrophoresis and transblotted onto nitrocellulose membrane (Bio-Rad). The membrane was blocked with 5% nonfat dry milk and incubated with anti-phospho-p70S6K (Thr389) (1:1,000) (Cell Signaling), anti-Twist (1:1,000) (Santa Cruz), anti-Sox9 (1:1,000) (Abcam), anti-N-cadherin (1:1,000) (Zymed), anti-E-cadherin (1:1,000) (BD Transduction Laboratories) in phosphate-buffered saline containing 0.1% Tween 20 rotating at 4°C overnight. After washing, the membrane was further incubated with secondary antibodies coupled to horseradish peroxidase at room temperature for 1 h and developed with an enhanced chemiluminescent detection kit (Amersham).
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