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23 protocols using anti gap43

1

Hippocampal Protein Expression Analysis

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The hippocampi of rats were rapidly collected and stored in liquid nitrogen immediately. The protein concentration was tested using a Pierce bicinchoninic acid (BCA) protein assay kit (Thermo scientific). Samples containing 40 μg of total protein were separated in 10%–15% sodium dodecyl sulfate (SDS)‐polyacrylamide gels and then transferred to polyvinylidene difluoride (PVDF) membranes (0.22 μm; Millipore Corp). The membranes were blocked in TBST containing 5% nonfat dry milk for 90 min and incubated with the following primary antibodies overnight at 4°C: anti‐PSD95 (goat monoclonal antibody; Abcam, 1:2,000), anti‐SYP (rabbit monoclonal antibody; Abcam, 1:2,000), anti‐GAP43 (rabbit monoclonal antibody; Abcam, 1:2,000), anti‐BDNF (rabbit monoclonal antibody; Abcam, 1:2,000), anti‐p‐CREB (phosphor S133, rabbit monoclonal antibody; Abcam, 1:5,000), anti‐CREB (rabbit monoclonal antibody; Abcam, 1:2,000), and anti‐β‐actin antibody (1:500, mouse monoclonal antibody; Boster, 1:500). On the next day, the membranes were incubated with the corresponding secondary antibody (anti‐goat/rabbit/mouse IgG; ZSGB‐BIO, 1:5,000) for 90 min at room temperature. After using clarity western electrochemiluminescence (ECL) substrate (Bio‐Rad), protein bands were visualized in the Bio‐Rad Imager. The intensities of the protein bands were analyzed by densitometry using Syngene imaging systems.
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2

Quantitative Analysis of Lung Tissue Markers

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Lung paraffin sections were slided into 3μm-thick, dewaxed in xylol 5min for twice, and then rehydrated in 100% ethanol 5min for twice, 75% ethanol 5min and tap water for 5min. The sections were washed by phosphate-buffered saline (PBS) 3min for twice. 3% Hydrogen peroxide and methanol mixed together and the slides were incubated in order to inactive endogenous peroxidases. Then the slides were put into 0.1% pepsin for antigen retrieval. Next procedure was blocked in protein block solution and incubated with primary antibodies: TGF-β1 (Abcam, USA, 1:400), anti-GAP43 (Abcam, USA, 1:1000), anti-TH (Abcam, USA, 1:300), Collagen I (Bioss, China, 1:300), anti-CollagenIII (Bioss, China, 1:300) at 37°C for 2h, then overnight at 4°C. The slides were washed by PBS, then followed by incubation with biotinylated rabbit anti-IgG (ZSGB-BIO, China) and stained with DAB kit (ZSGB-BIO, China) and hematoxylin. The software (Image-pro plus 6.0, Meida Cybernetics LP) was applied to the analysis of the lung section. We measured the density of positive cells in total lung section.
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3

Immunohistochemistry of Sciatic Nerve

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The 5-µm-thick sections of sciatic nerve on glass slides were washed three times with PBS and then fixed with 4% paraformaldehyde in PBS for 20 min at room temperature. After washing three times with PBS, the cells were permeabilized with 0.5% Triton X-100 in PBS for 10 min, rinsed with PBS and then immunostained with anti-GAP43 (Abcam) and neurofilament-M (Chemicon) antibodies for 1 h at room temperature. After washing three times with PBS, the glass slides were exposed to AlexaFluor 488-labeled and AlexaFluor 596-labeled secondary antibodies (Molecular Probes, Inc., Eugene, OR) for 1 h, and then the nuclei were stained with DAPI. The coverslips were mounted in anti-fade solution (Molecular Probes). Images of the samples were captured on a fluorescence microscope. In each specimen, staining without the primary antibody was performed in a side-by-side parallel specimen as a negative control, and all controls yielded a blank image.
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4

Protein Expression Analysis of OGD/R-Treated Cells

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Total protein was extracted from transfected OGD/R-treated cells using RIPA lysis buffer (Beyotime Institute of Biotechnology). Total protein was quantified using a BCA assay kit (Beyotime Institute of Biotechnology) and protein samples (20 µg/lane) were separated via 10% SDS-PAGE. The separated proteins were subsequently transferred onto PVDF membranes and blocked with 5% non-fat milk at room temperature for 1 h. The membranes were then incubated with the following primary antibodies overnight at 4°C: Anti-endothelial nitric oxide synthase (eNOS; 1:1,000; cat. no. ab5589; Abcam), anti-MAP-2 (1:1,000; cat. no. ab32454; Abcam), anti-GAP-43 (1:1,000; cat. no. ab75810; Abcam), anti-Bcl-2 (1:1,000; cat. no. ab196495; Abcam), anti-Bax (1:1,000; cat. no. ab182733; Abcam), anti-cleaved caspase-3 (1:5,000; cat. no. ab214430; Abcam), anti-caspase-3 (1:2,000; cat. no. ab184787; Abcam) and anti-GAPDH (1:2,500; cat. no. ab9485; Abcam). Following the primary antibody incubation, the membranes were washed twice with TBS with 0.05% Tween-20 (TBST) and incubated with goat anti-rabbit IgG H&L secondary antibody (1:2,000; cat. no. ab6721; Abcam) for 1 h at room temperature. GAPDH was used as the internal loading control. Protein bands were visualized using ECL substrate (Pierce; Thermo Fisher Scientific, Inc.) and analyzed with ImageJ software (version 3.0; National Institutes of Health).
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5

Stem Cell Differentiation Protocol

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All reagents used in this study were commercially available. Basic fibroblast growth factor (bFGF) was ordered from Gelusite Biology Technology Company, Zhejiang, China. Poloxamer 407-grafted heparin copolymer was synthesized by our laboratory as previously reported27 (link). Dulbecco’s modified Eagle’s medium (DMEM) and fetal bovine serum (FBS) were purchased from Invitrogen (Carlsbad, CA, USA). Collagen types IV, laminin (LM), bFGF-R, fibronectin (FN), anti-GFAP, anti-GAP43, anti-Nestin and caspase-3 were purchased from Abcam (Abcam, CB, UK). Fluorescein isothiocyanate (FITC) was ordered from Sigma (Sigma-Aldrich, St. Louis, MO, USA). Cell Counting KIT-8 was purchased from Japan (CCK-8, Dojindo Laboratories Inc., Kumamoto, Japan).
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6

Western Blot Analysis of Brain Proteins

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At the same time points following the procedures [32 (link)], proteins were extracted from the MCA-supplied brain regions and loaded onto SDS-polyacrylamide gel for electrophoresis. Gel transfer to a PVDF membrane was performed under 200 V for 1 h. Membranes were blocked with 5% skimmed milk. Membranes were incubated with primary antibodies (1:1000, rabbit anti-BDNF, rabbit anti-NGF, rabbit anti-PSD-95, rabbit anti-SYN, mouse anti-Tau, rabbit anti-GAP43, rabbit anti-VEGF, rabbit anti-Ang-1, rabbit anti-Ang-2, rabbit anti-TrkB and rabbit anti-CREB, Abcam, MA, USA; 1:500, rabbit anti-HIF-1α, Santa Cruz Biotechnology, Inc. CA, USA) for 24 h at 4 °C. The secondary antibody was goat anti-rabbit IgG-HRP (Santa Cruz), which was incubated for 1 h at room temperature for all primary antibodies. Western blot images for each of the antibodies were analyzed using an image analysis program (ImageJ 1.42, National Institutes of Health, Bethesda, MD, USA) to quantify protein expression in terms of relative image density.
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7

Spinal Cord Histology and Immunostaining

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A parallel study to sciatic nerve analysis, lumbar spinal cords were also dissected and fixed by immersion overnight at 4°C, in a mixture of 4% paraformaldehyde and 0.1% glutaraldehyde in 0.2M phosphate buffer, pH 7.4. Three spinal cord tissues (L3-L6) per group (except for naive group) were processed, cut, then sectioned through multiple steps as prescribed before [28 (link)]. The protocol for histological and immunohistological staining were done following previously published work [22 (link),29 (link)]. The primary antibodies used were Anti-NeuN (Clone A60, Mouse Monoclonal Antibody, Cat# MAB377, Millipore. Billerica, Massachusetts, USA), Anti-GFAP antibody (GA-5: sc-58766, Mouse Monoclonal, Santa Cruz Biotechnology) or Anti-GAP-43 (rabbit polyclonal IgG, ab16053, ABCAM, Cambridge, UK). The sections were observed, and the stained neurons were quantified under a light microscope. The number of Neu-N labeled neurons, GFAP immunostained astrocytes, and the intensity of GAP-43 in the ventral and dorsal grey horns of the spinal cord were determined using Cell Sens Dimension software, and analyzed as described previously [26 (link)].
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8

Immunohistochemical Analysis of Atrial Tissue

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Immunohistochemistry was performed on paraffin-embedded atrial sections. Slices were incubated with anti-TH (Abcam) and anti- GAP43, Abcam) overnight at 4 °C. The slides were treated with peroxidase-conjugated goat anti-rabbit IgG (Zhongshan, China) at 37 °C for 20 min.
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9

Immunohistochemistry of APP/PS1 Mouse Brain

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The right hemisphere of APP/PS1 mice was fixed in 4% paraformaldehyde (Guoyao) and embedded with paraffin. Coronal paraffin sections (6-μm thick) were dewaxed, rehydrated, and treated with 3% H2O2/methanol solution for 10 min. Then, sections were boiled for 15 min in 0.01 M citrate buffer (pH 6.0). After the citrate buffer returned to room temperature, sections were washed with PBS and incubated in blocking solution (5% BSA) for 1 hr at 37°C, followed by being incubated overnight with primary antibodies at 4°C in a humidified chamber. Primary antibodies included anti-synaptophysin (1:250, Abcam) and anti-GAP43 (1:250, Abcam) rabbit antibodies and mouse monoclonal anti-Aβ antibody (6E10, 1:500, Covance). After being washed with PBS, the sections were incubated with anti-mouse or rabbit IgG-horseradish peroxidase (HRP) secondary antibody for 1 hr at 37°C, followed by diaminobenzidine (DAB) (Boster Biotech) and hematoxylin staining. Slides were assessed by light microscope (IX71, Olympus) and micrographs were analyzed by Image-Pro plus 6.0 software.
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10

Fluorescence Imaging of Neuronal Markers

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After incubation under different experimental conditions for 24 hours, double fluorescence labeling for GAP-43 and MAP2 expression was performed using rabbit polyclonal anti-GAP-43 (1:500; Abcam, Cambridge, MA, USA) or mouse monoclonal anti-MAP2 (1:400; Abcam) as the primary antibodies. The secondary antibodies were goat anti-rabbit conjugated to Cy3 (1:200; Abcam) or goat anti-mouse conjugated to Cy2 (1:200; Abcam). All procedures were performed in the dark to preserve fluorescence. Before incubation with the primary antibody, the cells were processed for fixation, non-specific site blocking, and permeabilization. Three washes with 0.1 M phosphate buffered saline were carried out between each step before covering with a coverslip. Slide observation and image capture were performed under a fluorescent microscope (Olympus BX63, Olympus Corporation, Tokyo, Japan) with a digital photo processing system (cellSens Dimension, version 1.6, Olympus Corporation, Tokyo, Japan).
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