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29 protocols using n2 supplement

1

Differentiation of LUHMES Cells

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LUHMES cells58 (link) were cultured on 0.1 mg/mL poly-l-lysine (Sigma-Aldrich, St. Louis, MO, USA) coated flasks (Nunclon DELTA surface, NUNC A/S, Roskilde, Denmark) in growth medium consisting of DMEM/F12 (Sigma-Aldrich) with 1% N2 supplement (Life Technologies, Carlsbad, CA, USA), and 0.04 µg/mL basic fibroblast growth factor (PeproTech, Rocky Hill, CT, USA). For experiments, cells were plated on multi-well plates, in differentiation medium consistent of DMEM/F12 with 1% N2 supplement, 1 µg/mL tetracycline, 0.49 µg/mL dibutyryl cyclic AMP (Sigma-Aldrich), and 2 ng/mL glial cell-derived neurotrophic factor (GDNF; R&D Systems, Minneapolis, MN, USA). Before plating, the multi-well plates were coated with 0.1 mg/mL poly-l-lysine (Sigma-Aldrich) at 4 °C overnight, washed three times with phosphate-buffered saline (PBS; Life Technologies) followed by coating with 5 µg/mL bovine fibronectin (Sigma-Aldrich) at 37 °C and 5% CO2 overnight, followed by once washing with PBS (Life Technologies), and air-drying. LUHMES cells were cultured at 37 °C, 5% CO2, and water-saturated air.
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2

Chick Embryo Muscle-MN Co-culture

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Hb9::GFP and Hb9::Foxp1 ESC-derived EBs with high levels of GFP expression were manually collected 5–6 days after RA/SAG addition. Axial, forelimb, dorsal hindlimb and ventral hindlimb muscles were dissected from HH stage 35 chick embryos. For adherent muscle co-cultures: dissected muscles were dissociated and plated onto matrigel-coated glass bottom dishes (MatTek Corporation). Hb9::GFP and Hb9::Foxp1 EBs were plated on top of the dissociated muscle and cultured for 3 days. Synapse formation was assayed using Alexa647-conjugated αBTX (1:300; Invitrogen). For three-dimensional collagen cultures, muscle explants were placed on either side of a single EB in a collagen bed (rat tail collagen IV, Calbiochem)65 and cultured for 24 h. About ∼80% of muscle explants showed >70% myosin heavy chain positive staining and ∼90% of explants showed axon growth. Data was extracted from this latter group. In both assays, muscle and MN co-cultures were incubated in core MN medium with N2 supplement and heparin (10 μg ml1; Sigma).
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3

Astrocyte Co-culture for iNGN Survival and Synapse Formation

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To aid in iNGN survival [17 (link)] and synapse formation [18 (link)], astrocytes were co-cultured with iNGNs. Rat cortical astrocytes (Life Technologies) were routinely cultured in astrocyte medium (ACM = DMEM + 15% fetal bovine serum + N2 supplement; Sigma-Aldrich, Sigma,-Aldrich, and Life Technologies, respectively) containing penicillin/streptomycin (100 units penicillin and 100 μg streptomycin/ml final concentration; Sigma-Aldrich), and passaged using StemPro Accutase (Life Technologies). Astrocytes were passaged a minimum of 3 times before co-culture, to ensure there were no neurons, and used until a maximum of passage 12. One to three days before co-culture, 2.5x104 astrocytes were seeded onto coverslips coated with 100 μg/ml PDL, in 24-well plates (Nunc/Thermo Fisher Scientific).
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4

Directed Pancreatic Differentiation from hiPSCs

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After transduction with scrambled-shRNA, shRNA-LSD1-927-treated hiPSCs were treated with puromycin for 72 h. A modified four-step induction protocol to direct pancreatic differentiation from hiPSCs was employed as described previously [5 (link)]. In stage 1 of the procedure, the hiPSCs were cultured for 4 days to form definitive endoderm in DMEM/F12 containing 0.2% BSA (Sigma, USA), 0.5× N2-supplement (Gibco, USA), 0.5× B-27 supplement (Gibco, USA), 100 ng/mL Activin A (Peprotech, USA), and 1 μM Wortmannin (Sigma, USA) with medium changes every day. In stage 2, the differentiated cells were cultured for 4 days in F12/IMDM (1:1) mixed with 0.5% BSA, 0.5× ITS-X supplement (Gibco, USA), 0.5× B-27 supplement, 2 μM RA (Sigma, USA), 20 ng/mL FGF7 (Peprotech, USA), and 50 ng/mL Noggin (Peprotech, USA) with medium changes every day. In stage 3, the cells were cultured for 5 days in DMEM/H (high glucose) containing 0.5% BSA, 1× ITS-X supplement, 1× N2-supplement, and 50 ng/mL EGF (Sigma, USA). The medium was refreshed every day. For maturation, cells were incubated another 7–9 days in DMEM/F12 containing 1× ITS-X supplement, 10 ng/mL bFGF (Peprotech, USA), 10 mM nicotinamide (Sigma, USA), 50 ng/mL Exendin-4 (Sigma, USA), and 10 ng/mL BMP4 (Peprotech, USA). All media and supplements were purchased from Gibco, and growth factors were from Peprotech, unless indicated.
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5

Oli-neu Oligodendrocyte Differentiation

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Embryonic mouse oligodendrocyte precursor cells (Oli-neu) were grown in DMEM (Gibco-Life Technologies 41965062) containing N2 supplement (Life Technologies), penicillin–streptomycin–glutamine (Life Technologies 10378016), T3 (Sigma-Aldrich; 340 ng ml−1), T4 (Sigma-Aldrich 89430; 400 ng ml−1), bFGF (PeproTech; 10 ng ml−1) and PDGF-ββ (R&D Systems; 1 ng ml−1) on plates coated with poly-l-lysine (Sigma-Aldrich; 0.01%). Cells were differentiated with differentiation medium (DMEM containing N2 supplement; penicillin–streptomycin–glutamine; T3 (Sigma-Aldrich; 340 ng ml−1); T4 (Sigma-Aldrich; 400 ng ml−1); ErbB inhibitor (Santa Cruz sc-204170; 1 µM)) for 1 day.
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6

Differentiation of GMSC-derived NPCs

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GMSC‐derived NPC‐like cells at passages 3–4 were seeded on poly‐d‐lysine‐ and laminin‐coated plastic coverslips (Nunc) and cultured in neurobasal medium supplemented with 1% N‐2 Supplement, 5% fetal bovine serum, 0.5 µM all‐trans‐retinoic acid (Sigma‐Aldrich, St. Louis, MO, http://www.sigmaaldrich.com), and 10 ng/ml brain‐derived neurotrophic factor (PeproTech) for neuronal differentiation 33. For Schwann cell differentiation, cells were cultured in regular MSC culture medium supplemented with 35 ng/ml all trans‐retinoic acid for 72 hours. The medium was changed to regular culture medium supplemented with 5 µM forskolin (Sigma‐Aldrich), 10 ng/ml bFGF, 5 ng/ml platelet‐derived growth factor AA, and 200 ng/ml heregulin‐β‐1 (PeproTech) 14, 19. The medium was replenished every 3 days. After 2 weeks, cells were prepared for immunocytofluorescence studies to examine the expression of neuronal or glial cell markers.
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7

Culturing Primary Nasal Epithelial Cells and Co-Culture with Fibroblasts

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Primary human nasal epithelial cells (hNEPCs) were maintained in Dulbecco’s Modified Eagle Medium (DMEM)/Nutrient Mixture F-12 (Cat.No.11320033, Gibco), which contained human epithelial growth factor (Cat.No.100-15-500, Peprotech), insulin (Cat.No.I5500-50MG, Sigma), cholera toxin (Cat.No.C9903-0.5MG, Sigma), hydrocortisone (Cat.No.H0888-1G, Sigma), 3,3’,5-triiodo-l-thyronine (Cat.No.T6397-100MG, Sigma), and N-2 supplement (Cat.No.17502001,Gibco-Invitrogen). Further, a 1% Antibiotic-Antimycotic solution (Cat. No.MIR 5970, Mirusbio) was added. hNEPCs were cultured at 37°C in a 5% CO2 cell incubator.
The NIH/3T3 cell line purchased from American Type Culture Collection (ATCC, Manassas, VA, USA) was cultured in DMEM (Cat.No.C11995500BT, Gibco) containing 10% fetal bovine serum (FBS) (Cat. No. 10099-141, Gibco-Invitrogen) and 1% penicillin-streptomycin (Cat. No.15140-122, Gibco). When the cell density reached about 80%, mitomycin C (Cat.No.M4287-2MG, Sigma) was added, treated in a 37°C cell incubator for 2 h, washed three times with PBS, and then co-cultured with the isolated primary cells.
Madin-Darby canine kidney (MDCK) cells were cultured in the following manner: 5% fetal bovine serum (FBS), 100 IU/mL penicillin, 100 mg/ml streptomycin, and 2 mM glutamine were added to the DMEM. Further, the cells were cultured at 5% CO2 and 37°C.
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8

Neuron Culture Characterization Protocol

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Forskolin, N2 supplement, bovine pituitary extract, anti-S100b
antibody (LOT 093M4784), poly-L-lysine hydrobromide, and
primary anti-vinculin antibody (LOT 016M4857V) were purchased from Sigma
Aldrich (St. Louis, MO). Alexa Fluor 546 anti-mouse secondary antibody (LOT
665662) was purchased from Invitrogen (Carlsbad, CA). Alexa Fluor 488
Phalloidin, fetal bovine serum, and Dulbecco’s Modification of
Eagle’s Medium (DMEM) were purchased from ThermoFisher Scientific
(Waltham, MA).
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9

Differentiation of iPSCs into Neural Progenitors

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Prior to differentiation, iPSC lines were adapted to feeder-free conditions using Matrigel (BD) and EBs were formed. After 4 days, neural induction was initiated as previously described (32 (link),40 ). Briefly, EBs were plated onto Geltrex-coated plates in Neural Induction medium 1 (DMEM/F12 supplemented with L-Glutamine (2 mM), N2 supplement, bovine serum albumin (BSA) (1 mg/ml), Y27632 (10 μM; Tocris), SB431542 (10 μM, Tocris), Noggin (200 ng/ml) and antibiotic/antimycotic (1% v/v)). After 4 days, medium was changed to Neural Induction medium 2 (as NI1, without SB431542 and Noggin and with addition of SHH C24II (200 ng/ml; SHH C24II; R&D Systems). After 6 days, medium was supplemented with FGF8a (100 ng/ml; R&D Systems), Heparin (5 μg/ml; Sigma), BDNF (20 ng/ml) and Ascorbic Acid (200 μM; Sigma)) and incubated for 7 days, until the appearance of dense neural rosette structures. Neural progenitor cells were manually selected and re-plated onto Poly-D-Lysine/Laminin-coated plates in final differentiation medium (DMEM/F12 supplemented with L-Glutamine (2 mM), N2 supplement, BDNF (20 μg/ml), GDNF (20 μg/ml), N6, 2′ -O-dibutyryladenosine 3′,5′ -cyclic monophosphate sodium salt (dcAMP, 0.5 mM; Sigma), Laminin (1 μg/ml) and antibiotic/antimycotic (1% (v/v)). Neurons were matured for 2 weeks in this medium before experimental procedures were carried out.
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10

Reagent Sources for Neurophysiology Research

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Reagents were obtained from the following sources: Abbott (Chicago, IL): sodium pentobarbital (0074-378-05); Affymetrix (Santa Clara, CA): HEPES, pH 7.3 (16924); Calbiochem (San Diego, CA): tetrodotoxin (584411); Jackson ImmunoResearch (West Grove, PA): normal donkey serum (017000121); Life Technologies: L-glutamine (25030-081), N-2 Supplement (17502-048), penicillin/streptomycin (15140-122), phosphate-buffered saline (Ca2+- and Mg2+-free, pH 7.4; 70011-044); Tris (pH 8.0; AM9856); Sigma-Aldrich (St. Louis, MO): bovine serum albumin (A8806), horse serum (H1138), sodium phosphate dibasic (RES20908), sodium phosphate monobasic (71505); Thermo Fisher Scientific: Triton X-100 (BP151-100); Tocris Bioscience (Minneapolis, MN): CNQX [6-cyano-7-nitroquinoxaline-2,3-dione] (0190), L-AP4 [L-(+)-2-amino-4-phosphono butyric acid] (0103), (RS)-CPP [(RS)-3-(2-carboxypiperazin-4-yl)-propyl-1-phosphonic acid] (0173).
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