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42 protocols using rabbit anti collagen 1

1

Immunoblot Analysis of ECM Proteins

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Immunoblot procedures were performed as described previously [16 (link)]. As primary antibodies, mouse anti-α-SMA (2 μg/mL; Invitrogen), anti-GADPH (0.05 μg/mL; Sigma-Aldrich), rabbit anti-collagen I (1:1000; Abcam, Cambridge, UK; cat. no. ab34710), rabbit anti-collagen III (1:5000; Abcam; cat. no. ab7778), rabbit anti-fibronectin (1:1000; Abcam; cat. no. 1b45688), anti-matrix metalloproteinase (MMP)-1 (1:1000; Abcam; cat. no. ab134184), and anti-MMP-13 (1:1000; Abcam; cat. no. ab51072) were used. Anti-mouse IgG (1:50000; Sigma-Aldrich) and anti-rabbit IgG (1:10000 Sigma-Aldrich) were used as secondary antibodies. Photographs were acquired with an Amersham Imager 600 (GE Healthcare). Densitometric analysis was performed using Image Quant TL software. Expression of proteins of interest was normalized to the expression of GADPH.
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2

Western Blot Analysis of Fibrosis Markers

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Western blot was performed as previously described (Ahn et al. 2019 (link)). The membranes were incubated with the primary antibodies: rabbit anti-TGF-β1 (1:1000, Proteintech, USA), rabbit anti-α-smooth muscle actin (α-SMA) (1:2000, ImmunoWay Biotechnology, USA), rabbit anti-collagen I (1:2000, Abcam, UK), rabbit anti-Smad3 (1:1500, Abcam, UK), rabbit anti-p-Smad3 (1:1500, Abcam, UK) or rabbit anti-β-actin (1:1500, Beyotime Institute of Biotechnology, China) overnight at 4 °C. The membranes were processed with the horseradish peroxidase-labelled secondary antibody (1:2000, Beyotime Institute of Biotechnology, China). The bands were visualised using the ECL detection reagents (Beyotime Institute of Biotechnology, China). The ratio of the density of bands of the detected protein to that of β-actin was used for statistical analysis.
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3

Multimodal Tissue Imaging Techniques

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DiI detection. Frozen tissue sections (7 µm) were stained with Hoechst 33342 (Invitrogen, San Diego, CA, USA) for 20 min at room temperature.
hematoxylin and eosin staining. Paraffin-embedded sections (4 µm) were dewaxed, rehydrated, and stained with hematoxylin (Merck, Rahway, NJ, USA) for 10 min at room temperature, washed with tap water, and counterstained with eosin (Merck) for 5 min.
Immunofluorescence. Paraffin-embedded sections (4 µm) were dewaxed, rehydrated and antigen retrieval was carried out by heat-induced antigen retrieval treatment in 10 mM citrate buffer pH 6.0 (Dako, Fargo, ND, USA). Samples were incubated in 10% normal serum (rabbit or mouse) and 1% BSA in PBS for 1 h at room temperature, followed by incubation with the primary antibody in 1% BSA in PBS overnight at 4 °C (Rabbit Anti-Ki67, 5 µg/mL; Rabbit Anti-Collagen I, 5 µg/mL; Mouse Anti-Collagen III,1:600; Abcam, Cambridge, MA, United States). The sections were then washed and incubated with the secondary antibody (Anti-Rabbit IgG Alexa Fluor 488, 1:500; Anti-Mouse IgG Alexa Fluor 647, 1:500; Abcam) in 10% normal serum and 1% BSA in PBS for 1 h at room temperature in the dark. Samples were counterstained with Hoechst 33342, washed and embedded in a mounting medium (Permafluor, Thermo Scientific, Boston, MA, USA).
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4

Immunohistochemical Analysis of Skin

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Samples were processed as previously described (Ilic et al., 2007; Stephenson et al., 2012 ). The following antibodies were used: rabbit anti-K14, rabbit anti-filaggrin, rabbit anti-involucrin, and rabbit anti-loricrin (all from Covance); rabbit anti-laminin (DAKO); mouse anti-p63 (Santa Cruz Biotechnology); rabbit anti-fibronectin, mouse anti-collagen IV, mouse anti-collagen VII, and rabbit anti-desmocollin 1 (all from Sigma-Aldrich); and rabbit anti-p63, mouse anti-K10, and rabbit anti-collagen I (all from Abcam). Secondary antibodies were obtained from Jackson ImmunoResearch and Life Technologies.
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5

Immunofluorescence Analysis of Corneal Cells

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Cultured cells were fixed with 4% paraformaldehyde for 10 min at room temperature. Mouse corneal cryosections were fixed with ice methanol for 10 min at −20 °C. All samples were blocked with 5% BSA (Sigma-Aldrich Corp, St. Louis, MO, USA) and incubated with FITC-conjugated phalloidin (Alexis Biochemicals, San Diego, CA, USA), rabbit anti-α-SMA (Abcam), rabbit anti-Collagen I (Abcam) and rabbit anti-Nrf2 (Abcam) antibodies at 4 °C overnight. The samples were subsequently incubated with Alexa Fluor 488-labeled donkey anti-rabbit IgG antibody (Invitrogen, Carlsbad, CA, USA) at 37 °C for 1 h. Nuclear counterstaining was performed using 4′,6-diamidino-2-phenylindole (DAPI, Sigma-Aldrich). Finally, the staining was observed under a confocal laser-scanning microscope (Nikon, Tokyo, Japan) or a fluorescence microscope (Nikon).
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6

Immunohistochemical Detection of E-cadherin and Collagen I

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The paraffin slides were deparaffinized, heated in citrate buffer for 15 minutes, incubated in 3% H2O2 in PBS for endogenous peroxidase inhibition, and incubated in blocking solution (Biocare Medical, Cat No. STHRP700H). Thereafter, the slides were incubated with rabbit anti-E-cadherin antibody (Abcam, Cat. No. ab76319, 1:300 dilution) and Rabbit anti-collagen I (Abcam, Cat. No. ab34710, 1:300 dilution) overnight in a humidity chamber at 4°C. The sections were incubated with species-specific secondary antibodies for 1 hour at room temperature. The avidin-biotinylated complex–horseradish peroxidase technique (Biocare Medical, Cat No. STHRP700H) was employed to complete the detection of antigens.
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7

Histological Skin Analysis Protocol

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Collected skin sections were fixed at a 10% buffered formalin solution at 4 °C for 24 h, dehydrated in isopropyl alcohol (70%, 80%, 96%, and 100%), embedded into the paraffin, and cut on a thickness of 5 μm using a rotating microtome (Leica, Wetzlar, Germany). All slides were stained with hematoxylin-eosin (H&E) and the following immunohistochemical markers: rabbit anti-MMP9 in a 1:25 dilution (Lab Vision; Thermo Scientific, Rockford, IL, USA); rabbit anti-collagen I in a 1:300 dilution (Abcam; Cambridge, UK); rabbit anti-CD34 in a 1:3500 dilution (Abcam; Cambridge, UK); and rabbit anti-Iba1 in a 1:8000 dilution (Abcam; Cambridge, UK). For visualization, we used Mouse and Rabbit EnVision Detection Systems, Peroxidase/DAB detection IHC kit (DAKO Agilent; Manchester, UK). Before the antibody application, we performed a retrieval reaction. For anti-collagen I and anti-MMP9, the TRIS base buffer (pH 8.2) was used, and for anti-CD34 and anti-Iba1, the citrate buffer (pH 6.0) was used. Antibodies were applied for 60 min at room temperature with Mayer’s hematoxylin counterstain and finally mounted with a DPX medium (Sigma–Aldrich, Darmstadt, Germany). An analysis of slides was performed under a Leica DMLB 100T professional biological microscope (Leica, Germany), and slides were scanned using a digital microscope VisionTek® (Sakura, Osaka, Japan).
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8

Glomerular Mesangial Cell Response to Compound 1

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Rat glomerular mesangial cells (RMC, HBZY-1, Life-Science Academy of Wuhan University, Wuhan, China) were cultured and maintained in DMEM (Invitrogen, Carlsbad, CA), PH7.4, supplemented with 10% fetal bovine serum (FBS, Invitrogen, Carlsbad, CA), 2 mM glutamine, 100 U/ml penicillin, 100 µg/ml streptomycin at 37 °C. To examine the effect of compound 1, RMC cells were pre-treated with indicated concentration of compound 1 at 37 °C for 1 h, and then exposed to either 5.6 mM (normal glucose, NG) or 25 mM (high glucose, HG) D-glucose for 24 h or 48 h. Whole cell proteins were extracted using a cell lysis buffer kit (Cell signaling, MA, USA) and quantified by the Bradford assay (Bio-Rad, Hercules, CA). The equivalent amount of proteins were resolved with SDS-PAGE and transferred to nitrocellulose membranes. The membranes were blocked and then incubating with a rabbit anti-fibronectin pAb (Sigma, MO, USA), rabbit anti-collagen I (Abcam, MA, USA), rabbit anti-p47phox, rabbit anti-Nox4, rabbit anti-PCNA, rabbit anti-c-myc (all from Santa Cruz, Texas, USA) and mouse anti-α-tubulin (Sigma) at 4 °C overnight. After washing, the membranes were incubated with HRP-conjugated anti-rabbit or anti-mouse IgG secondary antibodies and detected by using ECL detection system.
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9

Immunohistochemical Analysis of Lymphatic Vasculature

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KLNs were frozen and sectioned with a cryomicrotome. After blocking with 3% (vol/vol) bovine serum albumin in phosphate-buffered saline (PBS) for nonspecific antigens, sections were incubated overnight with primary antibodies at 4°C, followed by secondary conjugated antibodies for 1 hour at room temperature. The following antibodies were used: rat anti-MECA79 (Novus Biologicals, 1:200), goat anti-PDPN (R&D Systems, 1:200), rabbit anti-fibronectin (Abcam, 1:300), rabbit anti-collagen I (Abcam,1:300), rabbit anti-LYVE-1 (Abcam, 1:300), fluorescein (FITC)-conjugated rat anti-LYVE-1 (BioLegend, 1:100), and rat anti-TGFβR1 (Santa Cruz, 1:200). The secondary antibodies used were either FITC-anti-rat, Cy3-anti-rabbit/goat, or aminomethylcoumarin acetate (AMCA)-anti-goat (Jackson ImmunoResearch, 1:200). Images were captured using a EvosFL Auto2 fluorescence microscope. Areas of positive staining were assessed semi-quantitatively by ImageJ software (NIH). Statistical analysis was performed using two-tailed Student’s t tests by Prism (GraphPad Software, Inc).
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10

Quantitative Analysis of Cytoskeletal Markers

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A Nikon U-2000 microscope was used to collect the immunofluorescent images. The expression of F-actin, Collagen-I and β1-integrin were tracked at 6-32 h post-plating. The expression of β3-tublin and Neu-N were examined in cells at Day 1 and Day 5 of differentiation. The primary antibodies used in this study include mouse anti-F-actin (Millipore, Temecula CA, 1:100 dilution), rabbit anti-collagen-I (Abcam, Cambridge, MA 1:100 dilution), rabbit anti-β3-Tublin (Tuj1, Abcam, 1:200 dilution), mouse anti-NeuN (Millipore, 1:100 dilution) and rabbit anti-β1-integrin (Santa Cruz Biotechnology, 1:100 dilution). Secondary antibodies were purchased from Invitrogen (Carlsbad, CA) and used at a dilution of 1:200.
The images were quantitatively analyzed by ImageJ (NIH). In determining the percentage of positively stained cells, we set the threshold at 50% of the highest staining intensity across the samples. Cell length-to-width ratio was analyzed to reveal cell polarization. Since cell width varies along an elongated cell, average cell width was evaluated from the ratio of cell area and cell length.
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