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U bottom 96 well plate

Manufactured by Greiner
Sourced in Germany, Austria, Belgium, United States, Italy

The U-bottom 96-well plate is a laboratory equipment designed for various applications. It features a U-shaped well bottom, providing a larger surface area for cell culture and sample collection. The plate is made of high-quality materials, ensuring durability and consistent performance.

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33 protocols using u bottom 96 well plate

1

Splenocyte Isolation and Cytokine Assay

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To prepare splenocytes, single cell suspensions of spleen were treated with lysing buffer (Sigma-Aldrich).
Splenocyte cultures was performed in a 96-well U-bottom plate (Greiner Bio One, Frickenhausen, Germany) at 37°C with 5% CO2 in GIBCO®RPMI 1640 medium (Thermo Fisher Scientific) supplemented with 10% FBS (NATOCOR, Carlos Paz, Argentina), 1% GIBCO® GlutaMAX, 100 U/ml penicillin, 100 μg/ml streptomycin (all from Thermo Fisher Scientific) and 50 μM 2-mercaptoethanol (Sigma-Aldrich).
To determine IFN-γ concentration in supernatants, splenocytes (1 × 106 cell/well) were stimulated for 72 h at 37°C with SIINFEKL peptide (1 μg/ml) or OVA (100 μg/ml) and IFN-γ measured by ELISA (IFN-γ ELISA MAXTMkit, Biolegend, San Diego, CA, USA). The supernatant IFN-γ concentration was calculated after subtraction of background response (cells incubated with media).
To determine intracellular cytokines, splenocytes (3 × 106 cells/well) were stimulated for 5 h with SIINFEKL peptide (2 μg/ml) in the presence of GolgiStop (0.7 μl/ml) and GolgiPlug (1 μl/ml) (BD Bioscience, San Diego, CA, USA). In some experiments, anti-CD107a (ID4B) antibody was added during the incubation with the peptide/GolgiStop/GolgiPlug mix.
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2

Assessing CD4+ T-cell Polarization by moDCs

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To assess functionality, moDCs (24h‐stimulated as described above) were co‐cultured with allogenic naïve CD4+ T‐cell for 6–7 days in a 96‐well U‐bottom plate (Greiner) at a 1:10 ratio. The naïve CD4+ T cells were purified from PBMCs by MACS (Naïve CD4+ T‐cell isolation kit II, Miltenyi Biotec) and purity was around 98% as assessed by flow cytometry after isolation. After 6–7 days of co‐culture, supernatant was collected and stored at ‐80°C until measurement of cytokine levels (IFN‐γ, IL‐10, and IL‐4) by ELISA (all kits from eBioscience, the Netherlands). Furthermore, the polarization of T cells was analyzed using flow cytometry. Cells were first stained for viability using FVD (APC‐Cy7), followed by extracellular staining of CD4 (PerCp‐Cy5.5), CD25 (FITC) and CD69 (FITC). Cells were fixed and permeabilized using the Foxp3 fixation/permeabilization kit (eBioscience, the Netherlands). Subsequently, cells were stained for intracellular markers FoxP3 (PE‐Cy7), GATA3 (PE) and Tbet (PE‐Cy7). All antibodies were purchased from eBioscience (The Netherlands).
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3

Splenocyte Cytokine Production Assay

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Spleen cell suspensions were obtained after lysing the red blood cells using the RBC lysing buffer (Sigma-Aldrich). Splenocytes (1 × 10 6 cell/well) were incubated for 72 h in a 96-well U-bottom plate (Greiner Bio One) with medium or OVA (100 μg/mL) at 37 °C and 5% CO 2 . The GIBCO® RPMI 1640 medium (Life Technologies) was used supplemented with 10% heat-inactivated fetal bovine serum (PAA Laboratories GmbH, Linz, Austria), 2 mM GIBCO® Glutamax, 100 U/mL penicillin, 100 μg/mL streptomycin (all from Life Technologies) and 50 μM 2-mercaptoethanol (Sigma-Aldrich). Supernatants were collected at 72 h to determine cytokine production by ELISA.
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4

Quantification of IgT+ B Cells in Fish

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Total leukocyte populations from individual fish were dispensed into 96-well U bottom plates (Greiner bio-one, Germany) at a density of 1 × 106 cells/ml. Following two washing steps with ice-cold bovine serum albumin (BSA) 0.5% in phosphate-buffered saline (PBS), cells were incubated with 50 μl of FITC labeled mouse anti-IgT mAb (1.1 mg/ml, 1:10 dilution) for 1 h at 37 °C. After two washing steps with BSA-PBS 0.5%, cells were resuspended in 1% PBS. Two replicates per each fish were set. Just before the reading, 10 μl of propidium iodide (Sigma, working stock at 50 μg/ml) were added to each sample for the detection of viable cells from forward scatter (FSC) vs PI graphics. Positive IgT B cells were quantified by flow cytometry in a CyFlow Space Cytometer (Partec) equipped with FloMax® Software. Leukocytes without the FITC- mouse anti-IgT mAb conjugate were used as non-stained controls (NS) to optimize and standardize the system. Further analysis was performed with FlowJo v.10 (FlowJo LLC, Tree Star).
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5

IFN-γ ELISPOT Assay for HPV E6/E7

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1 × 105 MNCs were seeded into 96-well U bottom plates (Greiner bio-one, Frickenhausen, Germany) in RPMI medium supplemented as above with or without 6 nmol/mL each of Peptivator HPV16 E6 & E7 (Miltenyi Biotec, Bergisch–Gladbach, Germany) for 24 h. The assay was then transferred to IFN-γ-coated MultiScreen-HTS-IP (Merck Millipore, Darmstadt, Germany) for another 48 h. IFN-γ capture (clone 1-D1K) and biotinylated detection (clone 7-B6-1) antibodies were purchased from Mabtech AB (Cologne, Germany); ExtrAvidin®–Alkaline Phosphatase and BCIP/NBT solution was purchased from Sigma-Aldrich (Taufkirchen, Germany). Spots were counted by an AID iSpot FluoroSpot Reader System with the EliSpot 6.0 iSpot software (AID Diagnostika, Straßberg, Germany). Phytohemagglutinin-L (PHA, Sigma-Aldrich, Taufkirchen, Germany) was utilized as a positive control.
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6

Cytokine Profiling of Activated CD4+ T Cells

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To evaluate the cytokine secretion of CD4+ T cells, thawed PBMCs were seeded at 5 × 105 cells per 100 µl X-Vivo 15 cell culture medium (Lonza, Basel, Switzerland) in 96-well U-bottom plates (Greiner bio-one, Kremsmünster, Austria) and rested overnight at 37°C/5% CO2. Afterward, cells were either stimulated with Leukocyte Activation Cocktail (Phorbol 12-myristate 13-acetate, ionomycin, and Brefeldin A; BD Pharmingen™, CA, USA) X-Vivo 15 + 10 μl/ml or remained unstimulated for 6 h at 37°C/5% CO2. Finally, cells were washed and stained to analyze secretion of TNFα, IL-17A, GM-CSF, and IFNγ of CD3+CD4+ T cells by flow cytometry (Gallios, Beckman Coulter).
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7

Tilapia-specific IgT+ B cell response

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A second experiment was done to evaluate specific IgT+ B cell immune response. Six tilapias per group (50.0 ± 6.3 g) were used for the study of the specific B cell response against the synthetic P0 peptide. Two experimental groups were settled. One group of tilapia was immunized by intraperitoneal (i.p.) injection on days 0 and 15 with the TT-P0 Ls antigen at the dose of 100 μg per fish. The second group was the control non-immunized. Samples of blood from the caudal vein, head kidney and spleen were collected of all fish at 7 days after booster (day 22) and were used for lymphocyte isolation as described before. Total leukocyte populations from individual fish were dispensed into 96-well U bottom plates (Greiner bio-one, Germany), at a density of 2.5 × 105 cells/ml in 100 μl of l-15 containing 5% FBS and P/S. The cells were incubated with 100 μl of supplemented l-15 medium containing 10 μg/ml of synthetic P0 peptide or with supplemented medium only (negative controls), respectively. After 72 h of incubation at 25 °C, the leukocytes harvested and were analyzed based on side and forward light scatter parameters for the quantification of P0-specific IgT+ cells as described before.
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8

Comparative Analysis of Tumor-Infiltrating and Peripheral T Cell Receptors

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To compare the TCRVβ sequence of TILs responding to the vaccine peptide pool with those responding to the bacteria-derived and microbiota-derived peptide pool, CFSE-labelled TILs were seeded at 5 × 104 cells per well in a 96-well U-bottom plates (Greiner Bio-One) and stimulated with the corresponding peptide pools incubated with irradiated autologous PBMCs (2 × 105 cells per well). After 10 days, between 5 × 103 and 10 × 103 live CD3+CD4+CFSEdim cells were sorted from each sample. Moreover, to isolate peripheral T cells responding to bacteria-derived and microbiota-derived peptides or the IPdBP pool, CFSE-labelled cells were sorted. Sorted cells from both experiments were spun down and supernatants were removed. The pellet was snap-frozen immediately. The DNeasy Blood & Tissue Kit (Qiagen) was used to extract the DNA, and amplification and sequencing of TCRVβ CDR3 was performed using the ImmunoSEQ platform (Adaptive Biotechnologies). For the TCR data analysis, non-productive TCRVβ sequences were excluded, and shared unique productive TCRVβ sequences were specified based on identical CDR3 sequence as well as V and J chains. Representation of data was done using VENNY2.1 (BioinfoGP, CNB-CSIC)51 .
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9

Purification of Human Dendritic Cells

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Endotoxin-free reagents and plastic materials were used in all experiments. RPMI-1640, phosphate-buffered saline (PBS), Dulbecco’s modified Eagle’s medium (DMEM), fetal bovine serum (FBS), and penicillin/streptomycin were purchased from Gibco (Invitrogen, Argentina). Twenty-four-well flat bottom polystyrene plates were purchased from Jet-biofil (AP Biotech, Buenos Aires, Argentina) while 96-well U-bottom plates and half-area 96-well ELISA were obtained from Greiner Bio One (GBO, Buenos Aires, Argentina). Ficoll-Paque PLUS and Percoll were obtained from GE Healthcare Life Sciences (Embiotec, Buenos Aires, Argentina). Recombinant human IL-4 and recombinant human granulocyte-macrophage colony-stimulating factor (GM-CSF) were obtained from Miltenyi Biotec (Lab Systems, Buenos Aires, Argentina). Lipopolysaccharide (LPS) from Escherichia coli was purchased from Sigma-Aldrich (Merck, Argentina).
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10

Expansion of Resting CD4+ T Cells

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PBMCs were freshly isolated from leukaphereses or buffy coats using Ficoll (Eurobio) density gradient centrifugation. Isolated PBMCs were cryopreserved in freezing medium containing 90% heat-inactivated FCS (Eurobio) and 10% dimethyl sulfoxide (DMSO; Applichem, Darmstadt, Germany) and stored in liquid nitrogen.
CD4+ T cells in the CSF of HLA-DR15+ RRMS patients were purified by positive selection using CD4 microbeads, human (Miltenyi, Bergisch Gladbach, Germany). Isolated bulk CD4+ T cells were seeded at 1.5 × 103 cells/well in 96-well U-bottom plates (Greiner Bio-One, Kremsmunster, Austria) together with 1.5 × 105 irradiated allogeneic PBMC (45Gy), 1 μg/ml PHA (REMEL, Thermo Fisher Scientific), and hIL-2 in RPMI-1640 medium containing 5% human serum (Blood Bank Basel), 2 mM glutamine (Thermo Fisher Scientific), 1% (vol/vol) nonessential amino acids (GIBCO, Thermo Fisher Scientific), 1% (vol/vol) sodium pyruvate (GIBCO), 5μM β-Mercaptoethanol (GIBCO), 100 U/ml penicillin (Corning), and 100 μg/ml streptomycin (Corning). The medium was changed by aspirating half of the old medium and adding the same amount of fresh medium containing hIL-2 every 3-4 days for up to 25 days until cells were fully rested.
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