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18 protocols using genistein

1

Sinhwakong Soybean Bioactive Compound Analysis

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Daidzein, daidzin, daidzin 6″-O-acetate, daidzin 6″-O-malonate, genistein, genistin, genistin 6″-O-acetate, genistin 6″-O-malonate, glycitein, glycitin, glycitin 6″-O-acetate, and glycitin 6″-O-malonate were purchased from FUJIFILM Wako Pure Chemical Corp (Osaka, Japan). CMS; dimethyl sulfoxide (DMSO); Gelrite™; indole-3-butyric acid (IBA); ascorbic acid; 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide; methyl jasmonate (MJ); and phosphate-buffered saline were purchased from Sigma-Aldrich Co., LLC (St. Louis, MO, USA). Mass-grade formic acid (FA), acetonitrile, methanol, and water were purchased from Thermo Fisher Scientific (Waltham, MA, USA). The other chemicals employed in this study were of American Chemical Society grade or higher. The Sinhwakong soybean variety (an elite cultivar) was supplied by the National Institute of Crop Science (Cheonju, Republic of Korea).
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2

Antibody and Entry Inhibitor Effects on EV Uptake

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For treatment with antibodies, HeLa or K562 cells were incubated with anti-CD33 (15 µg/mL; Southern Biotech, Birmingham, AL, USA), anti-Tim-1 (20 µg/mL; BioLegend, San Diego, CA, USA), or anti-Tim-4 antibody (20 µg/mL; Novus Biologicals, Centennial, CO, USA) for 1 h at 37 °C. The prepared EV samples were then inoculated onto the cells in the presence of the antibodies. After incubation for 4 h at 37 °C, the inoculum was removed and the cells were maintained in MEM-1%FBS for 72 h before the luciferase assay.
For treatment with various entry inhibitors, HeLa cells prepared in the 96-well plate were incubated with Pitstop 2 (30 µM; Merck), LY294002 (5 µM; FUJIFILM Wako Pure Chemical Corporation), dynasore (80 µM; Tokyo Chemical Industry Co., Tokyo, Japan), genistein (150 µM; FUJIFILM Wako Pure Chemical Corporation), or 5-[N-ethyl-N-isopropyl] amiloride (EIPA: 100 µM; Cayman Chemical) for 30 min at 37 °C. The prepared EV samples were then inoculated onto the cells in the presence of entry inhibitors. Four hours later, the cells were rinsed with 0.5 M NaCl–0.2 M acetic acid solution and then maintained in MEM–1%FBS for 72 h before the luciferase assay.
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3

Cytotoxicity Evaluation of Cell Lines

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ED cells were kindly provided by Dr M. Maeda (Kyoto University, Japan), and S1T cells were kindly provided by Dr N. Arima (Kagoshima University, Japan). MT-2 and Jurkat cells were obtained from the Fujisaki Cell Center, Hayashibara Biochemical Laboratories (Okayama, Japan) [26 (link)]. All cells were maintained in RPMI 1640 medium (Sigma-Aldrich Co., St. Louis, MO, USA) supplemented with 10% fetal bovine serum (Sigma-Aldrich Co., lot no. 13C491) containing 100 U/mL penicillin G and 100 μg/mL streptomycin (Life Technologies, Carlsbad, CA, USA). Each cell line was seeded (1 × 105 cells/mL, 90 μL/well) into a 96-well plate containing RPMI 1640 medium. After incubation at 37 °C for 24 h in an atmosphere containing 5% CO2, samples were added (10 μL/well) to the cells and incubated for an additional 72 h. Subsequently, the inhibition of cell proliferation was determined using a 2-(2-methoxy-4-nitrophenyl)-3-(4-nitrophenyl)-5-(2,4-disulfophenyl)-2H-tetrazolium monosodium salt (WST-8) assay kit (Dojindo, Kumamoto, Japan). Viable cells convert the tetrazolium salt in WST-8 to highly water-soluble formazan, which is monitored by measuring the absorbance at 450 nm using a microplate reader (Multiskan FC, Thermo Fisher Scientific, Waltham, MA, USA). Genistein (Wako, Osaka, Japan) was used as a positive control [21 (link)].
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4

Zebrafish Nrf2 Mutant and Knockout Protocols

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In this study, AB (wild-type), Nrf2-mutant (nfe2l2afh318) [13 (link)], and Nrf2-knockout (nfe2l2ait321) zebrafish larvae were used. Both mutant and knockout lines were maintained by PCR-based genotyping. The former was maintained as described previously [14 (link)]. For the latter, the primer sets 5′-TATTGTGCAGCCCTAGTGTG and 5′-TAGCTGAAGTCGAACACCTC were used. Larvae used in these experiments were obtained from parents of AB, homozygous nfe2l2afh318 or homozygous nfe2l2ait321 by natural mating. The nfe2l2afh318 and nfe2l2ait321 lines can be obtained from the Zebrafish International Resource Center (http://zebrafish.org (accessed on 2022 January 5)) and the National BioResource Project Zebrafish (https://shigen.nig.ac.jp/zebra (accessed on 2022 January 5)), respectively.
Genistein, glycitin, glycitein, daidzin, daidzein, equol, and cinnamaldehyde were purchased from FUJIFILM Wako (Osaka, Japan). Genistin and sulforaphane were purchased from NAGARA Science (Gifu, Japan) and LKT Laboratories (St. Paul, MN, USA), respectively. For stock solutions, hydrogen peroxide and sodium arsenite were dissolved in MilliQ water (Merck-Millipore Billerica, MA, USA), sulforaphane in ethanol, and isoflavone compounds in dimethyl sulfoxide. They were diluted to final concentrations with E3+ medium (5 mM NaCl, 0.17 mM KCl, 0.33 mM CaCl2, 0.33 mM MgSO4 and 0.1 µg/mL methylene blue).
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5

Endocytosis Inhibition Assay for Talaporfin

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Cells were suspended in DMEM or IMDM at 1.0 × 106 cells/mL in 1.5 mL microtubes. After the uptake of talaporfin, the following endocytosis inhibitors were added: 2‐deoxyglucose (2‐DG; Sigma‐Aldrich, St Louis, MO) at a concentration of 50 mmol/L), sodium azide (0.1% w/v; Kanto Chemical, Tokyo, Japan), methyl‐β‐cyclodextrin (5 mmol/L; Wako, Osaka, Japan), genistein (0.1 mmol/L; Wako), sucrose (0.45 M; Wako), chlorpromazine hydrochloride (20 mmol/L; Tokyo Chemical, Tokyo, Japan), cytochalasin β (1 mmol/L; Wako) and colchicine (1 mmol/L; Wako). After culture at 37°C for 30 minutes, the cells were chilled on ice for 30 minutes, washed three times with PBS, fixed with 0.5% formalin and analyzed by flow cytometry. For the inhibition of clathrin‐dependent endocytosis, Pitstop 2 (ab120687; Abcam, Cambridge, UK) was added to the serum‐free DMEM or IMDM to a final concentration of 25 μmol/L, and the cells were cultured at 37°C for 1 hour. Talaporfin was subsequently added to the cells to a final concentration of 30 μg/mL and the cells were washed three times with PBS, fixed with 0.5% formalin, and analyzed by flow cytometry.
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6

Keigairengyoto: Herbal Extract Antimicrobial Evaluation

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Keigairengyoto was supplied by Tsumura & Co. (lot number 2140050010, Tokyo, Japan) as a powdered extract obtained by spray-drying a hot water extract mixture of the following seventeen crude drugs: Scutellariae radix, Phellodendri cortex, Coptidis rhizoma, Platycodi radix, Aurantii fructus immaturus, Schizonepetae spica, Bupleuri radix, Gardeniae fructus, Rehmanniae radix, Paeoniae radix, Cnidii rhizoma, Angelicae radix, Menthae herba, Angelicae dahuricae radix, Saposhnikoviae radix, Forsythiae fructus, and Glycyrrhizae radix.
Amoxicillin and clavulanic acid used as reference antimicrobial drugs were purchased from Toronto Research Chemicals (Toronto, ON, Canada). Pure samples of apigenin, baicalein, baicalin, genistein, hesperidin, hesperetin, liquiritin, liquiritigenin, naringenin, glycyrrhizic acid, and glycyrrhetinic acid were purchased from Wako Pure Chemical Industries (Osaka, Japan). apigenin 7-O-glucoside was purchased from Sigma-Aldrich (St. Louis, MO, USA), narirutin from Extrasynthese (Genay, France), and isoliquiritin from Chemfaces (Hubei, China). baicalein, baicalin (baicalein 7-O-glucuronide), luteolin, genistin, wogonin, and wogonoside (wogonin 7-O-glucuronide), and berberine chloride were obtained from Tsumura & Co., with high purities for pharmacokinetic study.
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7

Flavonoid Glucuronide Compounds Evaluation

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Genistein, liquiritigenin, and hesperetin were purchased from Wako Pure Chemical Industries (Osaka, Japan). Genistein 7‐O‐glucuronide (GEN7G) and hesperetin 7‐O‐glucuronide (HPT7G) were purchased from Toronto Research Chemical Industries (Toronto, ON). liquiritigenin 4′‐O‐glucuronide (LQG4′G) and liquiritigenin 7‐O‐glucuronide (LQG7G) with purities high enough to be evaluated in biological tests were supplied by Tsumura & Co (Tokyo, Japan). The chemical structures of these flavonoids are shown in Supplemental Figure S1. Estradiol (Sigma–Aldrich, St. Louis, MO) was used as a reference.
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8

Compound Procurement for Biological Assays

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Kinetin was purchased from Nacalai Tesque (Tokyo, Japan). (−)-epigallocatechin gallate (EGCG), daidzein, genistein, epoxomicin, and bortezomib were purchased from FUJIFILM Wako Pure Chemical (Osaka, Japan). δ-tocotrienol was produced by LKT Laboratories, Inc. (St. Paul, MN). Phosphatidylserine was produced by Larodan Fine Chemicals AB (Solna, Sweden). Digoxin was produced by Cayman Chemical (Ann Arbor, MI). Carfilzomib was purchased from Cell Signaling Technology. b-RECTAS was synthesized in-house from RECTAS. Compound stock solutions were prepared with DMSO, except for Phosphatidylserine, which was dissolved in chloroform:methanol solution (95:5 %volume).
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9

Identification of Phytochemical Standards

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Apigenin, Apigenin 7-O-glucoside, daidzein, daidzin, daidzin 6″-O-acetate, daidzin 6″-O-malonate, genistein, genistin, genistin 6″-O-acetate, genistin 6″-O-malonate, glycitein, glycitin, glycitin 6″-O-acetate, and glycitin 6″-O-malonate were purchased from Fujifilm Wako Pure Chemical Industries, Ltd. (Osaka, Japan). Coumestrol, dimethyl sulfoxide (DMSO), kaempferol, kaempferol 3-O-glucoside (astragalin), isoquercitrin, isorhamnetin, luteolin, quercetin, and rutin were purchased from Sigma-Aldrich Co., LLC (St. Louis, MO, USA). The purities of the authentic compounds are listed in Table S1. Two quercetin diglycosides, two quercetin triglycosides, two kaempferol diglycosides, and three kaempferol triglycosides were purified from SLs. Mass-grade formic acid, acetonitrile, methanol, and water were purchased from Thermo Fisher Scientific Inc. (Waltham, MA, USA). Other chemicals used were of American Chemical Society grade or higher.
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10

Labeling and Endocytosis Inhibition

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FITC-labeled-CTB, and -dextran (MW 70-kDa) were purchased from Sigma and used at final concentrations 10 μg/ml and 3 mg/ml, respectively. Inhibitors of endocytotic pathways, genistein (Wako, Japan), dynasore (Cayman Chemical, MI, US), and latrunculin (Wako), were used at final concentrations, 200, 50, and 2.5 μM, respectively.
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