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54 protocols using expo32

1

Flow Cytometry Analysis of Cell Surface Markers

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Cells were grown in 100 mm dish (VWR) to about 95% confluency and harvested with 2% EGTA. Cells were washed and re-suspended in incubation buffer (IB) (13 mM NaCl, 2.7 mM KCl, 3.3 mM NaH2PO4, 3.8 mM Hepes buffer, 1 mM MgCl2, 5.5 mM Glucose and 1 mg/mL BSA). Cells were incubated with first antibody at r/t for an hour, washed three times with IB and incubated with Alexa Fluore 488 labeled secondary antibodies for 30 m at r/t. cells were washed and analyzed with a FACScan flowcytometer Coulter® Epics®XL. (The acquisition software was Beckman Coulter EXPO32). Data were analyzed using Flowjo program and Excel program was used to draw the graphs.
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2

Characterizing Inflammatory Cell Dynamics in Arthritis

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Leukocytes were prepared from lymph nodes draining the inflamed joint, spleen, and thymus of NI and CIA mice. Synovial cells were harvested by digesting synovial tissues with collagenase. The cells were incubated with primary antibodies for 15 min at 4°C. Antibodies against CD4, CD8, CD44, Foxp3, B220, and CD11c were purchased from eBioscience; the anti-CD62L antibody was from BD Pharmingen. Nonspecific staining was ascertained using isotype-matched control antibodies. TH cells were fixed in fixation/permeabilization buffer for 30 min; resuspended in 100 µl of permeabilization buffer; incubated for 30 min at 4°C with Alexa 488- or phycoerythrin (PE)-conjugated anti-IFNγ (eBioscience), fluorescein isothiocyanate (FITC)-conjugated anti-IL4, PE-conjugated anti-IL17A or isotype control antibodies (eBioscience); and analyzed by flow cytometry using EPICS XL and EXPO32 software (Beckman Coulter).
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3

Mung Bean Extract Modulates Oxidative Stress

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U937 cells were seeded in 6-well plates in a final concentration of 7 × 105 cells per well in a final volume of 3 mL/well of RPMI with 10% FBS, 100 U·mL−1 Penicillin, 100 μg·mL−1 Streptomycin and 1 mM Na Pyruvate, and incubated overnight at 37 °C. The following day, cells were incubated with extracts from raw and 3-day germinated mung bean (both 10× diluted) and ethanol control (1%) for 24 h, followed by a 16 h-treatment with 1 mmol·L−1 PQ/0.7 mmol·L−1 SNAP as final concentration as previously described for the HT-29 cell line. After treatment, cells were divided into two aliquots, one for ROS determination and the other for RNA extraction and gene expression studies. The cells were washed twice with PBS by centrifugation and discarding the supernatant, prior to their incubation with 1 µM acetic 5-(chloromethyl)-2-(3,6-diacetoxy-2,7-dichloro-9H-xanthen-9-yl) benzoic anhydride (CM-H2DC-FDA) dye for 45 min at 37 °C. ROS determination was performed using a Beckman Coulter Epics XL-MCL flow cytometer (Beckman Coulter, Fullerton, CA, USA) and analysis software Expo 32 (Beckman Coulter, Fulleton, CA, USA). Experiments were carried out 3 times independently with duplicates for each treatment in each experiment.
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4

Monitoring Mycobacterium smegmatis Autofluorescence

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Mycobacterium smegmatis strains were inoculated in a 7H9 medium and cultured for 3 days (stationary phase) at 80 rpm at 37°C. Subsequently, the cultures were transferred to a 37°C incubator for static culture avoiding light. After incubation at 14 and 60 weeks, bacteria were harvested and washed with PBS. Red autofluorescence of the bacterial cells was monitored by the flow cytometer (BeckmanCoulter EXPO32) in the FL3 channel (excitation 488 nm with a 610LP emission filter). Fresh bacteria (3 days) were used as the control. Flow cytometry data were analyzed using the FlowJo V10.
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5

Quantifying Apoptosis by Flow Cytometry

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Apoptotic cells were quantified by flow cytometry analysis of fragmented DNA after PI staining (1 μg/ml) in hypotonic solution, using an EPICS XL-MCL flow cytometer (Beckman Coulter, Miami, FL). Data were processed by an Intercomp and analyzed with Expo 32 software Beckman. For each sample, 10,000 events were recorded and cells with a hypoploid DNA content were quantified as apoptotic cells.
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6

Platelet-Monocyte Aggregation Quantification

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Two-color flow cytometry was used to identify the proportion of monocytes forming aggregates with platelets. Samples were run through a Beckman-Coulter XL2 flow cytometer, and data analysis was performed using EXPO32 (Beckman-Coulter) software. For molecular mechanism studies of platelet--monocyte binding, samples were preincubated with saturating concentrations of inhibitory mAb for 15 min before labeling. Platelet--monocyte adhesion was determined using directly conjugated CD14-PE and CD42b-FITC mAb. Leukocyte/platelet fluorescence levels using these antibodies were unaltered by heparin and EDTA treatment.
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7

Cell Cycle Analysis of DHA Treatment

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The cells (1 × 106 per ml) were seeded onto 6-well plate and treated with different concentration of DHA. After incubation for 48 h, cells were harvested, washed twice with cold PBS and fixed in ice-cold 70% ethanol overnight at 4 °C. The cells were concentrated by removing ethanol and treated with 0.01% Dnase-free RNase A for 10 min at 37 °C. Cellular DNA was stained with 0.05% propidium iodide (PI) for 20 min at 4 °C in darkness. The cell cycle distribution was detected with flow cytometry (FCM) on a Beckman Coulter Epics XL flow cytometer. The percentage of cells at G0/G1, S, or G2/M phase was documented using Expo32 software (Beckman Coulter, Miami, FL, USA).
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8

Flow Cytometry Analysis of Lymphocytes

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Flow cytometry was performed using an EPICS® XL-MCL flow cytometer equipped with Expo32 software (Beckman Coulter, Brea, CA, USA). The acquisition and analysis gates were restricted to the lymphocyte gate based on cell properties in the forward (FSC), and side scatter (SSC). FSC and SSC were set on a linear scale, and at least 106 cells were acquired. Analysis was performed using the Coulter EXPO 32vl.2 program (Brea, CA, USA). For additional analyses, gates were restricted to the CD3+CD4+ cell subset. For analysis of tumor cells, SSC was set on a logarithmic scale.
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9

Annexin V and PI Apoptosis Assay

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To distinguish the early apoptosis from the late apoptosis, the apoptosis was assessed also by flow cytometric analysis of annexin V-fluorescein isothiocyanate (FITC)/PI-stained cells assay using a commercial kit (Beckman Coulter) according to the manufacturer's instructions and then the percentage of cells in the different phases was evaluated. To this, the control and treated EGCs recovered at 24 h were pelleted and resuspended in binding buffer and co-stained with FITC-conjugated annexin V plus PI. After incubation at room temperature for 15 min, the stained cells were analysed by flow cytometry (EPICS-XL-MCL) with an Intercomp computer and EXPO32 software. The percentage of cells Annexin V+, PI+, AnnexinV+/PI+ and AnnexinV−/PI− was determined with EXPO32 software (Beckman Coulter) [9 (link), 39 (link), 53 (link), 59 (link)]. Flow cytometry analyses were repeated three times in independent experiments. Fluorescence flow cytometric profiles of one experiment representative of three, and graph showing the mean ± standard deviation of percentage of cells obtained in three different experiments are shown. The data were analysed as described in Statistical analysis.
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10

Measuring Oxidative Stress in Cells

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After experimental treatments, cells were washed with PBS and incubated in PBS containing 10 mM CM-H2DCFDA (Invitrogen) for 30 min at 37 °C in the dark. Then cells were washed twice in PBS, and fluorescence was measured by flow cytometer (Beckman Coulter) within an hour. Mean fluorescence intensity was quantized with Expo32 software (Beckman Coulter).
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