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5 protocols using propiophenone

1

Catalyst Support Characterization and Preparation

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HPS (Purolite Int., Llantrisant, UK), used as catalyst support, was of two types: hyper-cross-linked nonfunctionalized polystyrene, Macronet MN270 (BET SSA 1337 m2/g), and HPS containing tertiary amino groups, MN100 (BET SSA 724 m2/g), designated here as HPS-NR2. Both supports were washed with distilled water and acetone and then dried under vacuum as described elsewhere [34 (link)]. Benzene (BZ, 99.8%), toluene (TOL, 99.8%), naphthalene (NL, 99%), aniline (AN, 99%), anthracene (ANC, 97%), phenylacethylene (PHA, 98%), phenol (PL, ≥99%), propiophenone (PP, 98%), diphenylamine (DPA, 99%), tetrahydrofuran (THF, ≥99.9%), methanol (MeOH, 99.8%), acetone (≥99.5%), hydrogen peroxide (H2O2, 35%), isopropanol (i-PrOH, ≥99.5%), butanol (BuOH, ≥99%), hexane (≥99%), and dodecane (≥99%) were obtained from Sigma-Aldrich. Chloroplatinic acid hydrate (H2PtCl6·6H2O, Pt content 38.41%), palladium acetate (Pd(CH3COO)2, Pd content 47.68%), and ruthenium hydroxychloride (Ru(OH)Cl3, Ru content 45.05%) were purchased from JSC “Aurat” (Moscow, Russia). Sodium hydroxide (NaOH) was obtained from Reakhim (Moscow, Russia). Reagent-grade hydrogen of 99.999% purity was received from AGA (Tver, Russia). All chemicals were used as received. Distilled water was purified with an Elsi-Aqua water purification system.
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2

SCRA Hydrophobicity Determination by CHI

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Log D (pH 7.4) was determined by chromatographic hydrophobicity index (CHI) measurements for the (S)-enantiomer of each SCRA involved in this study. A calibration mix of ten compounds at 10 µg mL−1 in 1:1 (v/v) water:ACN was used (theophylline, phenyltetrazole, benzimidazole, colchicine, phenyltheophilline, acetophenone, indole, propiophenone, butyrophenone and valerophenone (all Sigma-Aldrich)). Test compounds were prepared at 0.25 mM in 1:1 (v/v) water:ACN. Samples (n = 2 for calibration standards; n = 1 for test compounds) were analysed using UPLC-PDA as described above. Retention times of calibration compounds are used to calculate retention factor (k), which is plotted against literature CHI values for each compound. Linear regression was performed to obtain a line of best fit, from which the CHI and subsequently CHI log D of calibration and test compounds are calculated. Calculations used and calibration data from CHI log D studies are provided in Section S3 of the supplementary information.
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HPLC Characterization of Organic Compounds

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Uracil, acetanilide, methyl and ethyl esters of p-hydroxybenzoic acid (parabens), acetophenone, propiophenone, butyrophenone, benzophenone, valerophenone, hexanophenone, heptanophenone, and octanophenone were from Sigma-Aldrich (St. Louis, MO). Stock solutions, 25 mM, were made in acetonitrile (Chromsolv, LC-MS grad, Fisher Scientific, Fair Lawn NJ). Samples were diluted to concentrations from 5 to 20 µM with deionized water. Sample concentrations were selected to maximize concentration while factoring in column loadability and solubility. Water was from a Millipore Milli-Q Synthesis A10 purification system (Billerica, MA). Peptide samples were from an LC-MS grade BSA tryptic digest from Fisher. The lyophilized sample was diluted, as per reagent instructions, to 1 pmol/µL in 95:5 0.1% Formic acid/acetonitrile. Formic acid was from Sigma. The BSA sample was stored at −5 °C when not in use and used within 48 h of thawing/dilution.
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Analytical Characterization of JAK Inhibitor

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Reference standard JAK01 (CPL409116) and its impurities (JAK07, JAK08, JAK09, JAK ImpA, JAK ImpB, JAK ImpC, JAK ImpD, JAK ImpE, and JAK SM-05) were manufactured in-house by Celon Pharma S.A. (Lomianki, Poland).
Mix reference substances to the distribution coefficient chromatographically determinations (CHI logD) including paracetamol, acetanilide, acetophenone, propiophenone, butyrophenone, and valerophenone (purity >99.0%) were purchased from Sigma-Aldrich Chemie GmbH (Steinheim, Germany).
Acetonitrile (ACN) (hypergrade for LC-MS), and methanol (MeOH, hypergrade for LC-MS) were purchased from Merck KGaA (Darmstadt, Germany), and dimethyl sulfoxide (DMSO, for HPLC) from POCH (Gliwice, Poland). Formic acid (98–100%, eluent additive for LC-MS) and ammonia (25% solution, eluent additive for LC-MS) were obtained from CHEM-LAB NV (Zedelgem, Belgium). Ultra-pure water for HPLC was obtained from the water purification system Milli-Q IQ 7000 from Merck KGaA (Darmstadt, Germany).
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5

Synthesis and Characterization of Silica-Based Stationary Phases

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Toluene (HPLC grade, ≥99.8%), urea, tetramethoxysilane (TMOS), metyltrimethoxysilane (MTMS), 1 M aqueous acetic acid solution, polyethylene glycol (PEG) of molecular weight (MW) = 10,000 g/mol, thiourea, acetophenone, propiophenone, butyrophenone, valerophenone, hexanophenone, heptanophenone and octanophenone were purchased from Sigma-Aldrich (Overijse, Belgium). Trifluoroacetic acid (TFA, LC-MS Ultra grade) was purchased from Fluka (Buchs, Switzerland). Octadecyldimethyl-N,Ndimethylaminosilane (ODS-DMA) was purchased from ChemPur Feinchemikalien und Forschungsbedarf GmbH (Karlsruhe, Germany). Acetonitrile (ACN, HPLC supra-gradient grade) was purchased from Biosolve B.V. (Valkenswaard, the Netherlands). N-(Trimethylsilyl)-imidazole (TMSI) was obtained from Merck Schuchardt OHG (Hohenbrunn, Germany). Deionized water was produced in-house with a Milli-Q water purification system of Merck Millipore (Billerica, MA, USA). PTFE filters (0.20 µm × 25 mm) were purchased from Macherey-Nagel (Düren, Germany). MassPREP Peptide Mixture was purchased from Waters (Milford, MA, USA). Fused-silica capillaries of 20 µm i.d. (90 µm outer diameter (o.d.)) and 40 µm i.d. (105 µm o.d.) were purchased from Polymicro Technologies (Phoenix, AZ, USA).
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