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Mixed model procedure

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The MIXED model procedure in SAS is a statistical tool used for analyzing linear mixed models. It provides a flexible framework for modeling the mean of a dependent variable as a function of fixed and random effects. The MIXED procedure can handle a wide range of data structures, including repeated measures, hierarchical designs, and unbalanced data. It offers various estimation methods and a comprehensive set of statistical tests and diagnostics to aid in model selection and inference.

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5 protocols using mixed model procedure

1

Evaluating Physiological Responses in Cows

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The data were evaluated for normality of residual distribution before analysis (PROC UNIVARIATE; SAS Institute, 2003 ) and all blood variables that were not normally distributed were logarithmically transformed. Data on production variables, plasma metabolites, BCS, and rectal temperature were analyzed using the MIXED MODEL procedure (SAS Institute, 2003 ) for repeated measures according to the following model:
in which, Yijklm is the dependent variable, µ is the average experimental value, Cowi is the random effect of cow, Treatmentj is the fixed effect of treatment j (j = CL or HS), Timek is the fixed effect of time k (k = number of day or week), (Treatment × Time)jk represents the effect of the interaction between treatment and time, Eijkl is the sampling error and eijklm is the error term.
Time (day or week) was modeled as a repeated measurement by using a first-order autoregressive covariance structure which was determined by the lowest Bayesian information criterion. When the interaction between treatment and time was significant (P ≤ 0.05), pair-wise comparisons of the individual means were performed using the Tukey–Kramer test. Differences between treatments were declared significant at P ≤ 0.05 and differences from P > 0.05 to P ≤ 0.10 were considered as trends.
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2

Pregnancy Rate and AI Factors

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Pregnancy rate to AI was defined as the number of animals diagnosed pregnant at the first pregnancy diagnosis following AI divided by the total number of animals submitted to AI. The MIXED Model procedure (SAS Institute Inc., Cary, NC) was used to analyze all binominal data (AI pregnancy rate and onset of puberty [n = 211], luteolysis by the time of insemination [n = 117]). The model included year, location, animal BW, BCS, AI technician, and treatment, with treatment as the fixed effects. Year, location, animal BW, BCS, RTS, and AI technician were considered random for all data analyses. Effects of BW, BCS, AI technician, treatment, and the appropriate interactions on AI pregnancy rate were initially evaluated within location and by the respective interactions with treatment. Terms with a significance value of P > 0.20 were removed from the complete model in a stepwise manner to derive the final reduced model for each variable. A statistical significance was reported at a P < 0.05. A tendency was reported at a 0.05 < P < 0.1.
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3

Analyzing Poultry Blood Sample Data

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For each age of blood sampling, data from the randomized design were subjected to an ANOVA [82 ] using the MIXED model procedure of the SAS Institute [83 ]. The main effect of treatment was fixed. The tier (deck) of cages was the experimental unit. Subsampling error terms included cages within tiers (2 cages per tier per treatment) and hens within cages within tiers (2 hens per cage per tier per treatment). Pooling of error terms occurred when P > 0.25. The data were normally distributed and reported as least square means ± SEM. Significant treatment effects were subjected to the SLICE option [84 ]. Significance was set at P < 0.05 for all statistical analysis.
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4

Herbicide Dose Impact on Plant Growth

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The statistical analysis was performed with SAS version 8.0 using a Mixed Model Procedure (SAS Institute, Cary, NC, USA). Block and its interaction with the year, growth stage and herbicide dose were random effects. Fixed effects were year, growth stage and herbicide dose. Year effect was nonsignificant so that data were pooled across years. After the significant F-test, the Least Significant Difference (LSD) test for p < 0.05 was used to compare the mean values.
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5

Seasonal Livestock Productivity Analysis

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Data were analyzed with the MIXED model procedure (SAS Inst Inc, Cary, NC). The model included the fixed effects of sex (steers and heifers) and season (early summer, late summer, fall, and winter) nested within year of birth. Year of birth was included as a random effect. There were 3 samples periods from each animal in 2011 and 4 samples periods from each animal in 2012. Animal was treated as a repeated measurement in the model. Least square differences and probability values were estimated for significant associations. All data are presented as means AE standard error of the mean. Data were considered different if P < 0.05.
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