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10 protocols using mifn γ

1

Inducible MHC-I Expression Modulation

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idAdpgkG MC38 cells were treated with 20 ng/ml mouse interferon γ (mIFNγ, R&D Systems, Inc) alone for 51 h prior to harvest (“control” condition), mIFNγ for 48 h followed by 1 μM dTAG-13 addition for 3 h (“dTAG” condition), mIFNγ and 1 μg/ml doxycycline for 51 h (“dox” condition), or mIFNγ and doxycycline for 48 h followed by dTAG-13 addition for 3 h (“both” condition). The 3 h degrader treatment time was chosen as previous work had shown maximal MHC-I display postdegradation at around 3 to 6 h (25 (link), 26 (link)).
Suspension GRANTA cells and MC38 cells detached using Accutase (Innovative Cell Technologies, Inc) were counted using a Vi-Cell XR cell counter (Beckman Coulter). Cells were then pelleted by centrifugation, flash frozen in liquid nitrogen, and stored at −80 °C.
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2

Assessing Astrocyte-Mediated Neuronal Cytotoxicity

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N2A Neuronal cells (ATCC CCL-131, ATCC, Manassas) were grown in 96 Well-plates and pre-activated with mIFN-γ (100 ng/ml, R&D Systems) for 24 h. Thereafter, medium was replaced after extensive washes with PBS with astrocyte-conditioned media. Cytotoxicity was measured using LDH release (CytoTox 96® Non-Radioactive Cytotoxicity Assay, Promega) after 24 h as suggested by manufacturer’s protocol.
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3

Cytotoxicity Quantification of Activated N2A Cells

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N2A Neuronal cells (ATCC CCL-131, ATCC, Manassas) or mouse oligodendrocytes (Celprogen, 11004–02) were grown in 96 Well-plates and pre-activated with mIFN-γ (100 ng/ml, R&D Systems) for 24 h. Thereafter, medium was supplemented after extensive PBS washes with ACM. Cytotoxicity was determined by quantifying LDH release (CytoTox 96® Non-Radioactive Cytotoxicity Assay, Promega) after 24 h as suggested by manufacturer’s protocol.
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4

Islet Isolation and Functional Analysis

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IL-22ra1ΔβKO and their wildtype littermates (IL-22ra1fl/fl) were euthanised and freshly prepared collagenase P (Roche, Indianapolis, IN) solution (0.5 mg mL−1) was injected into the pancreas via the common bile duct. The perfused pancreas was then digested at 37 °C for 20 min, and islets were purified via centrifugation on a Histopaque-1077 (Sigma; #10771) gradient. Islets were then handpicked under a stereoscopic microscope, enumerated, and cultured overnight in 5 mM glucose.
Following overnight culture, human islets were plated at 10 islets per well in 5.5 mM glucose. We conducted static glucose-stimulated insulin secretion tests by challenging islets (mouse and human) consecutively with 2.8 mM glucose for 30 min, 20 mM glucose for 30 min and 100 nM GLP-1 (7–36 active peptide; Sigma-Aldrich) in 20 mM glucose for a further 30 min. We collected supernatants for insulin and proinsulin secretion measurements, and the islets were homogenized in Trizol for RNA analysis. A subset of wildtype islets was also stimulated with 10 ng mL−1 mIFNγ (R&D; Cat # 485-MI) in the presence/absence of 50 ng mL−1 mIL-22-Fc for 48 h.
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5

Dual Luciferase Reporter Assay

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J774 cells were transfected with luciferase reporter constructs using an Effectene Transfection Reagent kit (Qiagen). Cells were treated with mIFN-γ (100ng/ml; R&D) and LPS (100ng/ml, Sigma E. coli O111:B4). Luciferase assays were performed 8h after treatment under the Dual Luciferase Reporter Assay System (Promega) using a Dynex luminometer and Renilla luciferase (pRL-TK) as a control.
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6

Murine Bone Marrow-Derived Macrophage Generation

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For the generation of murine bone marrow-derived macrophages (BMDMs), bone marrow cells of wild-type or Irf1−/− mice (6–8wks) were cultured in DMEM medium supplemented with 10% FBS, 10% L929 cell conditioned medium (LCCM), 100U/ml penicillin, 100ug/ml streptomycin, and 2mM L-glutamine. Cells were fed on day 5 and media was changed on day 7, 3h before mIFN-γ (100ng/ml; R&D) and LPS (100ng/ml; Sigma E. coli O111:B4) treatment. Supernatant was collected 2, 4, and 6h after treatment.
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7

Differentiation and Polarization of Macrophages

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For in vitro differentiation of monocytes into macrophages, FACS-sorted cells were suspended at 0.5×106 cells/mL in RPMI 1640 medium supplemented with 10% HI-FCS and 1% PenStrep (10378016; Gibco). CD14+HLA-DRneg/low/CD14+HLA-DRhigh monocytes were cultured in 96 well plates (200 µL/well) in the presence of 20 ng/mL M-CSF (216-MC-005; R and D Systems) for 4 days (Murray et al., 2014 (link)). Monocyte-derived macrophages [(Mb), in RPMI 1640 medium supplemented with 2% HI-FCS] were stimulated with IFN-γ [M(IFN-γ), 20 ng/mL; 285-IF; R and D Systems], IL-4 [M(IL-4), 20 ng/mL, 130-093-920; Miltenyi Biotec], or dexamethasone [M(dexa), 1 µM; Sigma] (Xue et al., 2014 (link)) for 48 hr.
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8

Evaluating MHC I Expression in Cancer

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Cancer cell lines were cultured in RPMI (Nacalai Tesque) supplemented with 10% FBS, penicillin (100 U/ml), streptomycin (100 mg/ml), and mIFN-γ (20 ng/ml; R&D Systems) for 24 hours to investigate the expression of H2Kb SIINFEKL. Cell proliferation ability was measured using a Cell Counting Kit-8 (DOJONDO).
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9

Sema4A Impacts CD8+ T Cell-Mediated Cancer Cell Killing

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Prior to the coculture assay, cancer cell lines (KPOVA and
KPOVA-Sema4A) were stimulated with mIFN-γ (20 ng/ml; R&D Systems) overnight. CD8+ T cells from splenocytes of OT-1
Rag−/− mice were isolated using a MojoSort Mouse CD8 T cell isolation kit (BioLegend). A total of 1 × 104 cancer cells were seeded in a flat-bottom 96-well plate and cocultured with different concentrations of CD8+ T cells (1:0, 1:5, and 1:10) with or without recombinant mouse Sema4A-His (1 μg/ml, LSBio). After a 48-hour incubation, living cancer cells (alive CD45) were counted by flow cytometry. Killing activity was calculated using the following equation: killing activity = 100 × {1 − [(alive CD45 without T cells) − (alive CD45 treated with T cells)] / (alive CD45 without T cells)}.
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10

Assessing Astrocyte-Mediated Neuronal Cytotoxicity

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N2A Neuronal cells (ATCC CCL-131, ATCC, Manassas) were grown in 96 Well-plates and pre-activated with mIFN-γ (100 ng/ml, R&D Systems) for 24 h. Thereafter, medium was replaced after extensive washes with PBS with astrocyte-conditioned media. Cytotoxicity was measured using LDH release (CytoTox 96® Non-Radioactive Cytotoxicity Assay, Promega) after 24 h as suggested by manufacturer’s protocol.
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