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4 protocols using anti rab11a

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Immunofluorescence analysis of mammary gland

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Dissected mammary fat pads were fixed in MethaCarn and embedded in paraffin. Seven μm-thick sections were deparaffinized before staining with primary antibodies (overnight, 4°C), and secondary antibodies (1 h, room temperature). Nuclei were counterstained with DAPI. Primary antibodies used were: rabbit polyclonal anti-PAR3 (1:200; Chemicon), anti-aPKC (1:200; clone C-20, Santa Cruz Biotechnology), anti-RAB11A (1:200; Abcam), anti-pSTAT5 (Tyr694, 1:100; Cell Signalling), anti-cleaved caspase 3 (1:100; Cell Signalling), anti-WAP (1:300; clone R-131, Santa Cruz Biotechnology) and anti-keratin 5 (K5) (1:2,000; Covance); rabbit monoclonal anti-KI67 (1:100; clone SP6, Neo Markers); and mouse monoclonal anti-HTT (1:300; 4C8), anti-E-cadherin (1:200; BD Bioscience) and anti-GM130 (1:100; BD Bioscience). Antigen retrieval was performed by boiling the slides for 10 min in a microwave in 10 mM citrate buffer (pH 6) for cleaved caspase 3, Ki67, WAP, and p-STAT5A, or in EDTA buffer (pH 8.8) for 10 min for PAR3, aPKC, RAB11A, HTT, GM130, K5, and E-cadherin antibodies. Secondary antibodies used were goat anti-mouse and anti-rabbit conjugated to AlexaFluor-488 or AlexaFluor-555 or Biotin (Vector Laboratories).
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2

Autophagy Regulation in Cell Lines

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Hoechst 33342 and Lyso-Tracker Red were purchased from Beyotime Biotechnology (Shanghai, China); Lipofectamine 2000 from Thermo Fisher Scientific (Shanghai, China); Bafilomycin A1 and Torin1 from Selleck Chemicals (Houston, USA); Puromycin from MedChemExpress (New Jersey, USA); Adenovirus Ad-mRFP-GFP-LC3 and Ad-GFP-LC3 from HANBIO (Shanghai, China); polybrene from Sigma-Aldrich (Saint Louis, USA); Anti-Actin, Anti-LC3, Anti-ATG5, Anti-Rab11A, and Anti-Rab18 monoclonal antibodies from Abcam (Shanghai, China); Anti-β-Tubulin polyclonal antibodies, goat anti-mouse and goat anti-rabbit HRP-conjugated Ig G (H + L) from FdBio Science (Hangzhou, China); ChamQ SYBR qPCR Master Mix (High ROX Premixed) from Vazyme (Nanjing, China); Protease inhibitor cocktail (Bimake, Texas, USA); TRIzol reagent and Goat anti-Rabbit IgG (H + L) Highly Cross-Adsorbed Secondary Antibody, Alexa Fluor™ Plus 594, from Invitrogen (Shanghai, China); ReverTra Ace qPCR RT Kit from TOYOBO (Oosaka, Japan).
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3

Rab GTPase Trafficking Assay

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The following primary antibodies were used; CD11a Alexa Fluor 594 clone HI111 (Biolegend, San Diego, CA), rabbit polyclonal anti-Rab5, anti-Rab11A, anti-Rab7, or anti-Lamp1 antibody (Abcam, Cambridge, UK), anti-beta-actin antibody (AnaSpec, Fremont, CA) (1:1000), and anti-LtxA monoclonal antibody 107A3A3 [75 (link)] in hybridoma supernatants (1:10 dilution). The following secondary antibodies were used: goat anti-rabbit IgG Alexa Fluor®488 (1:1000); horseradish peroxidase (HRP)-conjugated goat anti-mouse IgG (Fc) or (HRP)-goat anti-rabbit (Pierce, Rockford, IL) (1:10,000). Transferrin labeled with Alexa Fluor®555 was from Invitrogen (Waltham, MA, USA). Dynamin inhibitor Dynole 34-2 and its inactive control, Dynole 31-2, were purchased from SigmaAldrich (St. Louis, MO), Dynasore and Pitstop 2 (Abcam, Cambridge, UK). The inhibitors were used in the following concentrations: 10 μM Dynole 34-2; 10 μM Dynole 31-2; 10 μM Dynasore; 5 μM Pitstop 2.
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4

Antibody Characterization for Western Blotting and Immunofluorescence

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Anti-hemagglutinin (HA) mouse monoclonal antibody was purchased from Cell Signaling Technology (Beverly, MA). Anti–lysosomal-associated membrane protein 1 (LAMP1) used for immunofluorescence was purchased from Assay Designs (Ann Arbor, MI). Anti-Rab11a, anti-Rab5, and anti-LAMP1 (used for Western blotting) were purchased from AbCam (Cambridge, MA). anti-Rab5 was purchase from BD Transduction Laboratories (Lexington, KY). The PIP(3,5) antibody (cat. no. ZP035) was from Eschelon Biosciences (Salt Lake City, UT). Alexa-conjugated rabbit and mouse secondary antibodies were purchased from Invitrogen/Life Technologies (Carlsbad, CA). Anti-PIKfyve was a kind gift from Lois Weisman (University of Michigan). Peroxidase conjugated secondary antibodies were purchased from GE Healthcare Bio-Sciences (Pittsburgh, PA). All antibodies were characterized before western blotting and immunofluorescence labeling studies by serial dilutions to determine optimal conditions and negative controls (usually secondary antibody alone) to ensure specificity (data not shown).
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