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22 protocols using anti cd3 bv421

1

Flow Cytometric Immune Cell Profiling

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Cells were washed and stained with Fixable Viability Stain eFluor 780 (Thermo Fisher Scientific), anti-CD45 PerCPCY5.5, anti-GPR56 PE, anti-CD11b APC, anti-CD14 APC, anti-CD15 APC, anti-CD3 BV421 and anti-CD19 BV421 (all BD Biosciences, Le Pont de Claix) and processed on an Attune Next (Thermo Fischer Scientific) flow cytometer. Cell counts were obtained after manual gating on FlowJo V10.6.2 (Beckton Dickinson, Le Pont de Claix). Details are provided in the Supplementary Appendix.
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2

Immune Cell Analysis After HSCT

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Two hundred µL of blood was collected by tapping the facial vein of the mice 6, 12 and 24 weeks after HSCT. EDTA containing whole blood samples were first blocked with anti-CD16/32 antibody (Becton Dickinson, Heidelberg, Germany) and then surface stained for anti-CD3-BV421, anti-CD4-PerCp and CD8-PE-Cy7 (BD, Heidelberg, Germany). After staining, erythrocytes were lyzed with FACS lysing solution (BD, Heidelberg, Germany). For analyzing, 10.000 events were acquired using a FACSVerse flow cytometer (BD, Heidelberg, Germany). The data were analyzed using the FACSuite software.
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3

Multicolor Cytometry for Treg and MDSC

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For Treg cells, isolated PBMCs were stained with anti-CD4-FITC (RPA-T4/555346), CD25-APC (M-A251/555434), and CD45RA-PerCP-Cy 5.5 (HI100/563429) antibodies (BD Biosciences, San Jose, CA, USA) for 45 min, and antibody stained samples were washed twice. After intracellular staining, Treg cell frequencies were analyzed by a BD FACSVerse (BD Biosciences) flow cytometer. For MDSCs, isolated PBMCs were stained with anti-CD3-BV421 (UCHT1/562426), CD19-BV421 (HIB19/562440), CD56-BV421 (NCAM16.2/562751), CD20-BV421 (2H7/562873), CD11b-BB515 (ICRF44/564517), CD15-PerCP-Cy 5.5 (HI98/560828), CD14-APC (M5E2/555399), and HLA-DR-PE (G46-6/555812) antibodies (BD Biosciences) for 45 min, washed twice, and analyzed by a BD FACSVerse (BD Biosciences) flow cytometer. For 7-AAD and propidium iodide staining, isolated PBMCs were stained with 7-AAD (Biolegend, San Diego, CA, USA) or PI (BD Biosciences) for 10 min and then analyzed on a BD FACSVerse (BD Biosciences). Gating strategies are shown in Supplementary Fig. S1. PBMC viability before MDSC analysis is shown in Supplementary Fig. S2.
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4

Multicolor flow cytometry of PBMCs

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Fresh human PBMCs from an HIV-negative donor were stained with a cocktail of anti-CD3 BV421 (clone UCHT1 BD), anti-CD56 PerCP Cy5.5 (clone B159 BD), anti-CD7 FITC (clone CD7-6B7 eBioscience), anti-Siglec-9 PE (clone K8 BioLegend), and PE-conjugated isotype-matched control antibody (clone MOPC-21 BioLegend) for 15 min at room temperature. Cells were washed twice, fixed, and analyzed by flow cytometry (LSR II, BD).
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5

Characterization of CD4+ T Cell Responses in Liver Mononuclear Cells

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Mice were euthanized at indicated time points. Mononuclear cells were purified from the liver and CD4 T cell responses were analyzed as previously described (14 (link)). Briefly, hepatic mononuclear cells were restimulated with bone marrow-derived dendritic cells, pulsed with fixed parasites, and directly incubated at 37°C in the presence of 1/1000 Brefeldin A (GolgiPlug™, BD Biosciences). Cells were then stained with anti-CD4-FITC (BD PharmingenTM, clone GK15), anti-CD3-BV421 (BD Biosciences, clone 14S-2C11), followed by anti-IFN-γ-APC (BD PharmingenTM, clone XMG1.2) after permeabilization with 0.1% saponin. Myeloid cells were stained with anti-CD11b-Pacific Blue (BD HorizonTM, clone MI/70), anti-MHC-II-FITC (BD PharmingenTM, clone 2G9), anti-Ly6C-PerCP (Biolegend, clone HK1.4), anti-Ly6G-PE (Biolegend, clone 1A8), anti-F4/80-PECy7 (Biolegend, clone BM8), and anti-CD11c-APC (eBioscience, clone N418). Flow cytometric analysis was performed with a BD LSRFortessa cell analyzer (Becton Dickinson). Samples were analyzed with Flowjo software.
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6

Dissociation and Immunophenotyping of Intestinal Lamina Propria

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Use the Lamina Propria Dissociation Kit (Miltenyi biotech, North Rhine Westphalia, Germany) to dissociate the lamina propria cells of the dams intestine and prepare them into a single cell suspension for flow cytometry. The surface markers of intestinal lamina propria lymphocytes were stained as follows. For extracellular markers, single cells were stained at 2 × 106 cells per well in a 96-well V bottomed plate. T and B cells were stained with anti-CD3 BV421, anti-CD23 FITC, anti-CD21 BB700, anti-B220-PE, anti-CD19 APC, anti-CD45 APC-CY7 (BD, NJ, United States). DC and macrophage cells were stained with anti-F4/80 BV421, anti-MHCII PERCP-CY5.5, anti-CD11c APC (BD, NJ, United States). Cells were acquired on an LSRII (Becton Dickinson) and analyzed by FlowJo (Tree Star, Ashland).
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7

Multicolor Flow Cytometry Analysis

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Analysis was performed using a BD LSRII Flow Cytometer (BD Biosciences, San Jose, CA). Data were analyzed using FCS Express 6 software. Antibodies used included anti-CD5 PerCP/Cy5.5, anti-CD3 BV421, anti-γδ T cell receptor (TCR) phycoerythrin (PE) and anti-CD69 APC-Cy7 (BD Biosciences, San Jose, CA). CD5-Fc fusion protein (G&P Biosciences, Santa Clara, CA) and CD19-Fc fusion protein (ACROBiosystems, Newark, DE) were used to detect anti-CD5 constructs and anti-CD19 constructs, respectively, with a secondary anti-IgG Fc antibody (Jackson Immunoresearch Laboratories, West Grove, PA), as previously described.6 (link) Violet Proliferation Dye 450 (VPD450) was used to label the target cells in the cytotoxicity and co-culture studies, and cell death was assessed using eFluor 780 (described below). Degranulation of γδ T cells was detected using anti-CD107a APC (BD Biosciences, San Jose, CA).
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8

CD19-CAR and CD19-NSCAR γδ T Cells Cytotoxicity

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CD19-CAR- and CD19-NSCAR-modified γδ T cells were cultured with 697 cells in 12 × 75 mm FACS tubes at an E:T ratio of 5:1 in a total volume of 250 μL and incubated for 12 h at 37°C in 5% CO2. 697 cells were labeled with VPD450 using the manufacturer’s protocol prior to co-culture. Following the incubation, cells were stained for flow cytometry to analyze cell surface expression of CD107a using antibodies including anti-CD3 BV421, anti-γδ TCR PE, anti-CD107a APC (BD Biosciences, San Jose, CA), and viability dye eFluor 780 (Thermo Fisher Scientific, Waltham, MA).
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9

Multiparametric Flow Cytometry Phenotyping

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For MDSCs, isolated PBMCs were stained with anti‐CD3‐BV421 (UCHT1/562426), CD19‐BV421 (HIB19/562440), CD56‐BV421 (NCAM16.2/562751), CD20‐BV421 (2H7/562873), CD11b‐BB515 (ICRF44/564517), CD15‐PerCP‐Cy 5.5 (HI98/560828), CD14‐APC (M5E2/555399), and HLA‐DR‐PE (G46‐6/555812) antibodies (BD Biosciences, San Jose, CA, USA) for 45 min. For lectin‐type oxidized LDL receptor 1 (Lox‐1) expression on PMN‐MDSCs, lox‐1‐BV421 (15C4/358610) (Biolegend, San Diego, CA, USA) was used. For Treg cells, isolated PBMCs were stained with anti‐CD4‐FITC (RPA‐T4/555346), CD25‐APC (M‐A251/555434), CD45RA‐PerCP‐Cy 5.5 (HI100/563429), and Foxp3‐PE (259D/C7/560046) antibodies (BD Biosciences) for 45 min. For CD8+ T cells, isolated PBMCs were stained with anti‐CD8‐APC (RPA‐T8/555369) (BD Biosciences), CD39‐PE‐Cy7 (A1/328212) (Biolegend), and PD‐1‐PerCP‐Cy5.5 (EH12.1 /561273) (BD Biosciences) antibodies. Samples were washed twice and then read on a BD FACSVerse (BD Biosciences) flow cytometer. Dead cells were excluded using 7‐Amino‐Actinomycin D (7AAD) (Biolegend). Gating strategies for PMN‐MDSCs, M‐MDSCs, and CD8+ T cells are shown in Supporting information Fig. 1A‐C. All the process of T‐cell assays and flow cytometry analysis (linear axis) adhered to the guidelines of MIATA compliant and Cossarizza [30].
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10

Isolation and Characterization of SARS-CoV-2 Spike-Specific B Cells

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Peripheral blood mononuclear cells were isolated from blood samples of the convalescent COVID-19 patient samples through Ficoll density gradient centrifugation and B cells were extracted by magnetic-activated cell sorting using the B Cell Isolation Kit II human (Miltenyi Biotec) according to the manufacturer’s instructions. The enriched B cells were first incubated with the Viability 405/452 Fixable Dye (Miltenyi Biotec) for 15 min at room temperature, subsequently for 30 min on ice with in-house produced recombinant His- and Fc-tagged SARS-CoV-2 Spike RBD-SD1 protein and, and finally with anti-CD3-BV421 (BD Biosciences), anti-CD14-BV421 (BD Biosciences), anti-CD16-BV421 (BD Biosciences), anti-CD27-PE-Cy7 (BD Biosciences), anti-CD19-FITC (Miltenyi Biotec), anti-His-PE (Miltenyi Biotec) and anti-His-APC (Miltenyi Biotec) for 30 min on ice. AutoMACS Rinsing Solution (Miltenyi Biotec) supplemented with 0.5% BSA (Miltenyi Biotec) was used to prepare the RBD and antibody solutions and to wash the cells after the different staining steps. Single cells were sorted directly into lysis buffer that consisted of 0.5 × PBS, 10 mM DTT and 2 U/μl RNasin Plus (Promega) with a BD FACSAria™ Fusion (BD Biosciences), immediately frozen on dry ice and stored at −80 °C.
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